RetrogeneDB ID: | retro_mmul_787 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 11:8771767..8772930(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2327 | ||
Ensembl ID: | ENSMMUG00000004380 | ||
Aliases: | None | ||
Description: | trifunctional enzyme subunit alpha, mitochondrial [Source:RefSeq peptide;Acc:NP_001252819] |
Percent Identity: | 85.68 % |
Parental protein coverage: | 51.11 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SSALLTRTHINYGVKGDVAVVRINSPNSKVNTLSKELHSEFTEVMNEIWASDQIRSAVLISSKPGCFIAG |
SSALLTRTH.N.GVKGDVA..RINSPNSKVNTL..ELHSEFTEVMNEIW....IRSA.LISSKPGCFIAG | |
Retrocopy | SSALLTRTHMNHGVKGDVAIIRINSPNSKVNTLNEELHSEFTEVMNEIWVTNHIRSAALISSKPGCFIAG |
Parental | ADINMLSACKTLQEVTQLSQEAQRILEKLEKSPKPVVAAINGSCLGGGLELAISCQYRIATKD-RKTVLG |
A.INML..CKT.QEVTQ.SQEA.R..EKLEK..KPV...INGSCLGGGLELAISCQYRIATKD.RK..LG | |
Retrocopy | AHINMLATCKTPQEVTQMSQEA*RTFEKLEKVTKPV*S-INGSCLGGGLELAISCQYRIATKD<RKNILG |
Parental | VPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRNIRADRAKKMGLVDQLVEPLGPGLKPPEERTMEYL |
.PEVLLG.LPGAGGTQRLPKMVGVPAA.DMML..RNI.ADRAKKMGLVD.LVEPLG.GLKPPE.R..EY. | |
Retrocopy | APEVLLGLLPGAGGTQRLPKMVGVPAAFDMMLPSRNIHADRAKKMGLVDRLVEPLGTGLKPPE*RAIEYQ |
Parental | EEVAITFAKGLADKKISPKRNKGLVEKLTAYAMTIPFVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKT |
EEVAITFAKGLADK.ISPKR.KGLVEKLT.YAMTIPFVRQQV.KKVEEKVRK.TKGLYPAPLKIIDVVKT | |
Retrocopy | EEVAITFAKGLADK-ISPKRDKGLVEKLTGYAMTIPFVRQQVSKKVEEKVRKETKGLYPAPLKIIDVVKT |
Parental | GIEQGSDAGYLSESQKFGELVMTKESKALMGLYHGQVLCKKNKFGAPQKDVKHLAILGAGLMGAGIAQVS |
GIEQGSDAGYLSESQKFGEL.MT.ESKALMG..HGQVLCKKNKFGAPQKDVKHL.ILG.GL.GA.IAQVS | |
Retrocopy | GIEQGSDAGYLSESQKFGELAMTSESKALMGFCHGQVLCKKNKFGAPQKDVKHLVILGEGLKGADIAQVS |
Parental | VDKGLKTILKDATLTGLDRGQQQVFKGLNDKVKKKALTSFE |
VDK.LKTILKDATLT.L..GQQQVFKGLNDKVKKKALTSFE | |
Retrocopy | VDKRLKTILKDATLTRLGQGQQQVFKGLNDKVKKKALTSFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 55 .02 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 55 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 61 .67 RPM |
SRP007412_heart | 0 .00 RPM | 306 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 191 .31 RPM |
SRP007412_liver | 0 .00 RPM | 102 .13 RPM |
SRP007412_testis | 0 .00 RPM | 178 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_958 |
Pan troglodytes | retro_ptro_664 |
Gorilla gorilla | retro_ggor_772 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000006972 | 1 retrocopy | |
Homo sapiens | ENSG00000084754 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004918 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004380 | 2 retrocopies |
retro_mmul_1987, retro_mmul_787 ,
|
Macaca mulatta | ENSMMUG00000023254 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008546 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001616 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012583 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000011732 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000001593 | 1 retrocopy |