RetrogeneDB ID: | retro_pabe_817 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:8661104..8662395(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HADHA | ||
Ensembl ID: | ENSPPYG00000012583 | ||
Aliases: | None | ||
Description: | trifunctional enzyme subunit alpha, mitochondrial [Source:RefSeq peptide;Acc:NP_001126017] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 56.49 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MVACRAIGILSRFSAFRILRSRGYICRNFT-GSSALLTRTHINYGVKGDVAVVRINSPNSKVNTLSKELH |
.VA.R.IGILSRF..FRIL.S.GYI.RNFT..S..L.TRTHINYGVKGDVAV..I.SPNSKVNTL.KELH | |
Retrocopy | IVAYRTIGILSRFCDFRIL*SQGYIRRNFT>SSASL-TRTHINYGVKGDVAVI*IKSPNSKVNTLNKELH |
Parental | SEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACKTLQEVTQLSQEAQRIVEKLEKSTKPIVA |
SEF.EVMNE.WA..QI.SAVLISSKPGCFIAGADINMLA.CKT.QEVTQ.SQEA.R..EKLEK.TKP..A | |
Retrocopy | SEFTEVMNEVWATNQITSAVLISSKPGCFIAGADINMLATCKTPQEVTQISQEARRTFEKLEKATKPVIA |
Parental | AINGSCLGGGLELAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRA |
...GSCLGG.L.LAISCQYRIATKD.KT.LG.PEVLLG.LPGAGGTQRLPKMVGVPAA..MMLT.R.IRA | |
Retrocopy | SVSGSCLGGRLQLAISCQYRIATKDGKTILGAPEVLLGILPGAGGTQRLPKMVGVPAAFVMMLTSRNIRA |
Parental | DRAKKMGLVDQLVEPLGPGLKPPEERTMEYLEEVAITFAKGLADKKISPKRDKGLVEKLTAYAMTIPFVR |
DRAKKMGLVDQLVEPLGPGLKP.EE.T.EYLEEVAITFAKGLADKKISPKRDKGLVEKLT.Y.MTIPFVR | |
Retrocopy | DRAKKMGLVDQLVEPLGPGLKPAEEWTIEYLEEVAITFAKGLADKKISPKRDKGLVEKLTVYTMTIPFVR |
Parental | QQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELVMTKESKALMGLYHGQVLC |
QQVYKKVEEKV.K.T.GLYPAPLKIIDVVKT.IE.GSDAGYLSESQKFG.L.MT.ESKALMGLY.GQVLC | |
Retrocopy | QQVYKKVEEKVQKETNGLYPAPLKIIDVVKTEIE*GSDAGYLSESQKFGDLAMTSESKALMGLYRGQVLC |
Parental | KKNKFGAPQKDVKHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGLNDKVKKKALTS |
KKN.FGAPQKD.K.LAILG.GL.GAGI..VSVDK.LKTILKDATL..L...QQ.VFKGLNDKVKKKALTS | |
Retrocopy | KKNQFGAPQKDAKRLAILGEGLKGAGIT*VSVDKRLKTILKDATLARLGQRQQRVFKGLNDKVKKKALTS |
Parental | FERDSIFSNLTG |
FERDSIFSNLTG | |
Retrocopy | FERDSIFSNLTG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 49 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 45 .60 RPM |
SRP007412_heart | 0 .00 RPM | 218 .31 RPM |
SRP007412_kidney | 0 .00 RPM | 139 .08 RPM |
SRP007412_liver | 0 .06 RPM | 94 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000006972 | 1 retrocopy | |
Homo sapiens | ENSG00000084754 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004918 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004380 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008546 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001616 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012583 | 2 retrocopies |
retro_pabe_2576, retro_pabe_817 ,
|
Pongo abelii | ENSPPYG00000014986 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011732 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000001593 | 1 retrocopy |