RetrogeneDB ID: | retro_ptro_664 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 12:8858020..8859313(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HADHA | ||
Ensembl ID: | ENSPTRG00000011732 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.54 % |
Parental protein coverage: | 56.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MVACRAIGILSRFSAFRILRSRGYICRNFTGSSALLTRTHINYGVKGDVAVVRINSPNSKVNTLSKELHS |
MVA.RAIGILSRFS.FRIL.S.GY..RNFT.SSALLTRTHINYGVKGDVAV.RI.S..SKVNTLSKELHS | |
Retrocopy | MVAYRAIGILSRFSDFRIL*S*GYRRRNFTESSALLTRTHINYGVKGDVAVIRIKSSTSKVNTLSKELHS |
Parental | EFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAA |
EF.EVMNE.WA..QIR.AVLISSKPG.FIAGADINMLA.CKT.QEVTQ.SQEAQR..EKLEK.TKP..AA | |
Retrocopy | EFMEVMNEVWATNQIRNAVLISSKPGRFIAGADINMLATCKTPQEVTQVSQEAQRTFEKLEKATKPVIAA |
Parental | INGSCLGGGLEVAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRAD |
I.GSCLGGGLE.AISCQYRIATKD.KT.LG.PEVLLG.LPGAGGTQRLP.MVGVPA..DMMLT.R.I.AD | |
Retrocopy | ISGSCLGGGLELAISCQYRIATKDGKTILGAPEVLLGILPGAGGTQRLPEMVGVPALFDMMLTSRNIHAD |
Parental | RAKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAITFAKGLADKKISPKRDKGLVEKLTAYAMTIPFVRQ |
.AKKMGLVDQLVEPLGPG.KPPEE.TIEYLE.VAITFAKGLADKKISPKRDKGLVEKLTAY.MTIPFVRQ | |
Retrocopy | SAKKMGLVDQLVEPLGPGIKPPEEWTIEYLEAVAITFAKGLADKKISPKRDKGLVEKLTAYTMTIPFVRQ |
Parental | QVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELVMTKESKALMGLYHGQVLCK |
QVYKKVEEKV.K.TKGLYPAPLKIIDVVKTGIE.GSDAGYLSESQKFG.L.M..ESKALMGLYHGQVLCK | |
Retrocopy | QVYKKVEEKVQKETKGLYPAPLKIIDVVKTGIERGSDAGYLSESQKFGSLAMISESKALMGLYHGQVLCK |
Parental | KNKFGAPQKDVKHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGLNDKVKKKALTSF |
KNKFGAPQKDVK.LAILG.GL.GAGI.QVSVDK.LKTILKDATLT.L..GQQQVFKGLNDKV.KKALTSF | |
Retrocopy | KNKFGAPQKDVKRLAILGEGLKGAGITQVSVDKRLKTILKDATLTRLGQGQQQVFKGLNDKVNKKALTSF |
Parental | ERDSIFSNLTG |
ERDSIFSNLTG | |
Retrocopy | ERDSIFSNLTG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 74 .68 RPM |
SRP007412_cerebellum | 0 .00 RPM | 91 .70 RPM |
SRP007412_heart | 0 .15 RPM | 327 .92 RPM |
SRP007412_kidney | 0 .05 RPM | 220 .98 RPM |
SRP007412_liver | 0 .07 RPM | 126 .62 RPM |
SRP007412_testis | 0 .11 RPM | 184 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_958 |
Gorilla gorilla | retro_ggor_772 |
Macaca mulatta | retro_mmul_787 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000006972 | 1 retrocopy | |
Homo sapiens | ENSG00000084754 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004918 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004380 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000008546 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001616 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012583 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000011732 | 2 retrocopies |
retro_ptro_2109, retro_ptro_664 ,
|
Pan troglodytes | ENSPTRG00000016351 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001593 | 1 retrocopy |