RetrogeneDB ID:

retro_mmul_808

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:11:51721352..51721610(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RNF181
Ensembl ID:ENSMMUG00000017824
Aliases:None
Description:E3 ubiquitin-protein ligase RNF181 [Source:RefSeq peptide;Acc:NP_001252843]


Retrocopy-Parental alignment summary:






>retro_mmul_808
ATTAGCCATGGGATTCCTGCACAGCTCAAGTGCCCCATGTGTCTTTTGAGCCTTGAGGAGGAGACTGACATTGAGATGCC
TTGCCATCACCTCTTCCATTGCAACTGAACCTTCCCTGGCTAAGCAAGACAAATTCCTCCCCCTGTGCTGCCATGAGCTG
CTCACTGATAATGACATGTAGGAGGAGCACAGATGAGATGAGGCCCACAAGCAGCAGCAGAAGTGTGGCTGGAGAAGCTG
CATGGAGCCAGGTACACC

ORF - retro_mmul_808 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.84 %
Parental protein coverage: 57.52 %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSS-CILPWLSKTNS-CPLCRHELPTDDDTYEEHRRD
...G..A.LKCP.CLL..EEE.T.IEMPCHHLFH.....LPWLSKTNS..PLC.HEL.TD.D..EEHR.D
RetrocopyISHGIPAQLKCPMCLLSLEEE-TDIEMPCHHLFHCN<LNLPWLSKTNS<LPLCCHELLTDNDM*EEHR*D
ParentalKARKQQQ-QHRLENLHGAMYT
.A.KQQQ....LE.LHGA.YT
RetrocopyEAHKQQQ<EVWLEKLHGARYT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 9 .86 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 14 .76 RPM
SRP007412_cerebellum 0 .00 RPM 7 .43 RPM
SRP007412_heart 0 .00 RPM 20 .79 RPM
SRP007412_kidney 0 .00 RPM 26 .99 RPM
SRP007412_liver 0 .00 RPM 24 .54 RPM
SRP007412_testis 0 .00 RPM 44 .59 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_808 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_808 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_808 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1005

Parental genes homology:
Parental genes homology involve 5 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000196473 retrocopies
Homo sapiens ENSG000001688943 retrocopies
Macaca mulatta ENSMMUG00000017824 3 retrocopies
retro_mmul_1128, retro_mmul_1637, retro_mmul_808 ,
Pongo abelii ENSPPYG000000122252 retrocopies
Pan troglodytes ENSPTRG000000121382 retrocopies



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