RetrogeneDB ID: | retro_hsap_938 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:124677713..124678164(-) | ||
Located in intron of: | ENSG00000245498 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000254941 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF181 | ||
Ensembl ID: | ENSG00000168894 | ||
Aliases: | None | ||
Description: | ring finger protein 181 [Source:HGNC Symbol;Acc:28037] |
Percent Identity: | 65.58 % |
Parental protein coverage: | 98.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MASYFDEHDCEPSDPEQETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLP-PPAAK-TVVENLPRTVIR |
M..YF.E.DC....P.QET.T.MLLEL.RSLFNRMDFED.G..V.W.HHLP.P.A....VV.NLPRTVIR | |
Retrocopy | MTAYFNEQDCKLLNPKQETLTHMLLELTRSLFNRMDFEDSGMAVNWNHHLPPPAAKT<SVVGNLPRTVIR |
Parental | GSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYEEHRRDKAR-K |
.SQAE....V.....EEEE....MPCH.LFHS.CILP.LSKTN.CPLC..ELP...DT.EEHR.DKAR.K | |
Retrocopy | SSQAERHTQVPHV-LEEEEAVVGMPCH*LFHSNCILPRLSKTNPCPLCCQELPAVNDTCEEHRGDKAR<K |
Parental | QQQQHRLENLHGAM |
QQQQH.LENL..AM | |
Retrocopy | QQQQHCLENLYRAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .22 RPM | 28 .07 RPM |
bodymap2_adrenal | 0 .31 RPM | 31 .36 RPM |
bodymap2_brain | 0 .45 RPM | 15 .78 RPM |
bodymap2_breast | 0 .39 RPM | 26 .93 RPM |
bodymap2_colon | 0 .19 RPM | 19 .78 RPM |
bodymap2_heart | 0 .33 RPM | 15 .03 RPM |
bodymap2_kidney | 0 .12 RPM | 29 .64 RPM |
bodymap2_liver | 0 .15 RPM | 33 .19 RPM |
bodymap2_lung | 0 .14 RPM | 45 .85 RPM |
bodymap2_lymph_node | 1 .10 RPM | 27 .12 RPM |
bodymap2_ovary | 0 .46 RPM | 18 .00 RPM |
bodymap2_prostate | 0 .81 RPM | 36 .48 RPM |
bodymap2_skeletal_muscle | 0 .36 RPM | 31 .97 RPM |
bodymap2_testis | 0 .49 RPM | 30 .09 RPM |
bodymap2_thyroid | 1 .71 RPM | 27 .59 RPM |
bodymap2_white_blood_cells | 0 .18 RPM | 35 .95 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_650 |
Gorilla gorilla | retro_ggor_759 |
Pongo abelii | retro_pabe_807 |
Macaca mulatta | retro_mmul_1128 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019647 | 3 retrocopies | |
Homo sapiens | ENSG00000070423 | 1 retrocopy | |
Homo sapiens | ENSG00000168894 | 3 retrocopies |
retro_hsap_1005, retro_hsap_3771, retro_hsap_938 ,
|
Macaca mulatta | ENSMMUG00000017824 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000012225 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012138 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .34 RPM |
CEU_NA11843 | 0 .34 RPM |
CEU_NA11930 | 0 .62 RPM |
CEU_NA12004 | 0 .19 RPM |
CEU_NA12400 | 0 .60 RPM |
CEU_NA12751 | 0 .36 RPM |
CEU_NA12760 | 0 .18 RPM |
CEU_NA12827 | 0 .33 RPM |
CEU_NA12872 | 0 .52 RPM |
CEU_NA12873 | 0 .57 RPM |
FIN_HG00183 | 0 .69 RPM |
FIN_HG00277 | 0 .18 RPM |
FIN_HG00315 | 0 .44 RPM |
FIN_HG00321 | 1 .06 RPM |
FIN_HG00328 | 0 .33 RPM |
FIN_HG00338 | 0 .38 RPM |
FIN_HG00349 | 0 .28 RPM |
FIN_HG00375 | 0 .27 RPM |
FIN_HG00377 | 0 .30 RPM |
FIN_HG00378 | 0 .17 RPM |
GBR_HG00099 | 0 .73 RPM |
GBR_HG00111 | 0 .69 RPM |
GBR_HG00114 | 0 .55 RPM |
GBR_HG00119 | 0 .62 RPM |
GBR_HG00131 | 0 .69 RPM |
GBR_HG00133 | 0 .39 RPM |
GBR_HG00134 | 0 .35 RPM |
GBR_HG00137 | 0 .52 RPM |
GBR_HG00142 | 0 .78 RPM |
GBR_HG00143 | 0 .26 RPM |
TSI_NA20512 | 0 .25 RPM |
TSI_NA20513 | 0 .27 RPM |
TSI_NA20518 | 0 .28 RPM |
TSI_NA20532 | 0 .44 RPM |
TSI_NA20538 | 0 .18 RPM |
TSI_NA20756 | 0 .29 RPM |
TSI_NA20765 | 0 .44 RPM |
TSI_NA20771 | 0 .28 RPM |
TSI_NA20786 | 0 .29 RPM |
TSI_NA20798 | 0 .28 RPM |
YRI_NA18870 | 0 .54 RPM |
YRI_NA18907 | 0 .45 RPM |
YRI_NA18916 | 0 .91 RPM |
YRI_NA19093 | 0 .21 RPM |
YRI_NA19099 | 0 .48 RPM |
YRI_NA19114 | 0 .94 RPM |
YRI_NA19118 | 0 .33 RPM |
YRI_NA19213 | 0 .43 RPM |
YRI_NA19214 | 0 .42 RPM |
YRI_NA19223 | 0 .64 RPM |