RetrogeneDB ID: | retro_ptro_650 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 11:122786721..122787172(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF181 | ||
Ensembl ID: | ENSPTRG00000012138 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.94 % |
Parental protein coverage: | 98.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MASYFDEHDCEPSDPEQETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLP-PPAAK-TVVENLPRTVIR |
M..YF.E.DC....P.QE..T.MLLEL.RSLFNRMDFED.G..V.W.HHLP.P.A....VV.NLPRTVIR | |
Retrocopy | MTAYFNEQDCKLLNPKQEILTHMLLELTRSLFNRMDFEDSGMAVNWNHHLPPPAAKT<SVVGNLPRTVIR |
Parental | GSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRHELPTDDDTYEEHRRDKAR-K |
.SQAE....V.....EEEE....MPCH.LFHS.CILP.LSKTN.CPLC..ELP.D.DT.EEHR.DK.R.K | |
Retrocopy | SSQAERHTQVPHV-LEEEEAVVGMPCH*LFHSNCILPRLSKTNPCPLCCQELPADNDTCEEHRGDKSR<K |
Parental | QQQQHRLENLHGAM |
QQQQH.LENL..AM | |
Retrocopy | QQQQHCLENLYRAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .57 RPM | 25 .42 RPM |
SRP007412_cerebellum | 0 .29 RPM | 21 .87 RPM |
SRP007412_heart | 0 .12 RPM | 16 .58 RPM |
SRP007412_kidney | 0 .44 RPM | 77 .91 RPM |
SRP007412_liver | 0 .20 RPM | 44 .22 RPM |
SRP007412_testis | 1 .05 RPM | 51 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_938 |
Gorilla gorilla | retro_ggor_759 |
Pongo abelii | retro_pabe_807 |
Macaca mulatta | retro_mmul_1128 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019647 | 3 retrocopies | |
Homo sapiens | ENSG00000168894 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017824 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000012225 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012138 | 2 retrocopies |
retro_ptro_2557, retro_ptro_650 ,
|