RetrogeneDB ID: | retro_mmul_1128 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:122962316..122962770(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF181 | ||
Ensembl ID: | ENSMMUG00000017824 | ||
Aliases: | None | ||
Description: | E3 ubiquitin-protein ligase RNF181 [Source:RefSeq peptide;Acc:NP_001252843] |
Percent Identity: | 63.23 % |
Parental protein coverage: | 99.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MASYFDEHDCEPSDPEQETRTNMLLELARSLFNRMDFEDLGLVVDWDHHLP-PPAAK-NVVENLPRTVIR |
M..YF.E.DC....P..ET.T.MLLEL.RSLFNRMDFEDLG.VVD..HHLP.P.A....VV.NLPRTVIR | |
Retrocopy | MTAYFNEQDCKLLNPKRETLTHMLLELTRSLFNRMDFEDLGMVVDRNHHLPPPAAKA<SVVGNLPRTVIR |
Parental | GSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRHELPTDDDTYEEHRRDKAR-K |
.SQ.E....V.....EEE.T...MPCH.LFHS.C.LPWLSKT..CPLC..EL....DT.EEHR.DK...K | |
Retrocopy | SSQSERHTQVPHV-LEEEATVVGMPCH*LFHSNCNLPWLSKTDLCPLCCQELSANNDTCEEHRGDKVQ<K |
Parental | QQQQHRLENLHGAMY |
QQQQH.LENL..AMY | |
Retrocopy | QQQQHCLENLYRAMY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 9 .86 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 14 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .43 RPM |
SRP007412_heart | 0 .00 RPM | 20 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .99 RPM |
SRP007412_liver | 0 .00 RPM | 24 .54 RPM |
SRP007412_testis | 0 .04 RPM | 44 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_938 |
Pan troglodytes | retro_ptro_650 |
Gorilla gorilla | retro_ggor_759 |
Pongo abelii | retro_pabe_807 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000019647 | 3 retrocopies | |
Homo sapiens | ENSG00000168894 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000017824 | 3 retrocopies |
retro_mmul_1128 , retro_mmul_1637, retro_mmul_808,
|
Pongo abelii | ENSPPYG00000012225 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012138 | 2 retrocopies |