RetrogeneDB ID:

retro_mmur_1461

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_6436:35718..36060(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FUNDC1
Ensembl ID:ENSMICG00000000450
Aliases:None
Description:FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746]


Retrocopy-Parental alignment summary:






>retro_mmur_1461
AATTTTGAGTCACTGGACCTTGCAGAATTTGCTATAAAACAGCCATGGTGGTGTAAGCTGTTTGGGCAGGAATCTGGGCC
TTCGGCTGAAAAGTACAGAGTGGCAACCCAGCTGTTAATTGGAGGCGTCACTGGATGGTGTACAGGGTTCATATTCCAGA
AGGTTGGAAAGTTGGCTGCAACAGCTGTGGGAGGTGGATTTTTTCTTATTCAGCTTGCAAACCATACTGGTTACATTAAA
GTTGATTGGCAACGAGTAGAGCAGCTGAAGATCCGTAAGAGCAACCAGATACCTACTGAGGTCAAGAGCAAAGCTGAGGA
GGTGGTTTCATTTGTGAAGAAG

ORF - retro_mmur_1461 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 52.63 %
Parental protein coverage: 74.51 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKLAATAVGGGFLLL
..E.LDL.E.A....WW...FG..SGP..EKY.VATQ...GGVTGWC.GF.FQKVGKLAATAVGGGF.L.
RetrocopyNFESLDLAEFAIKQPWWCKLFGQESGPSAEKYRVATQLLIGGVTGWCTGFIFQKVGKLAATAVGGGFFLI
ParentalQVASHSGYVQIDWNRVEKDVNKAKRQIKKRANKAAPEINNIIEE
Q.A.H.GY...DW.RVE........QI.......A.E.......
RetrocopyQLANHTGYIKVDWQRVEQLKIRKSNQIPTEVKSKAEEVVSFVKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1461 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1461 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000108761 retrocopy
Cavia porcellus ENSCPOG000000129622 retrocopies
Echinops telfairi ENSETEG000000127633 retrocopies
Homo sapiens ENSG000000695091 retrocopy
Gorilla gorilla ENSGGOG000000233111 retrocopy
Latimeria chalumnae ENSLACG000000102151 retrocopy
Macropus eugenii ENSMEUG000000067955 retrocopies
Microcebus murinus ENSMICG00000000450 2 retrocopies
retro_mmur_1189, retro_mmur_1461 ,
Macaca mulatta ENSMMUG000000035051 retrocopy
Monodelphis domestica ENSMODG000000210883 retrocopies
Nomascus leucogenys ENSNLEG000000025132 retrocopies
Oryctolagus cuniculus ENSOCUG000000297535 retrocopies
Pongo abelii ENSPPYG000000202682 retrocopies
Pelodiscus sinensis ENSPSIG000000137931 retrocopy
Pan troglodytes ENSPTRG000000218211 retrocopy
Rattus norvegicus ENSRNOG000000034701 retrocopy
Sarcophilus harrisii ENSSHAG000000005011 retrocopy
Tarsius syrichta ENSTSYG000000091391 retrocopy



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