RetrogeneDB ID: | retro_ocun_1567 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018700:6786415..6786712(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000029753 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.61 % |
Parental protein coverage: | 65.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PPPQDYESDDDSYEVLDLTEYARRHHWWNRVFGHSSGPMVEKYSVATQIVMGGVTGWCAGFLFQKVGKLA |
PPPQDYESDD.S.EVLDLT.YARRH.W.N.VFGH.SGPMVE..S.ATQIVMG.VT.WC.G.L.QKVGKL. | |
Retrocopy | PPPQDYESDDNS*EVLDLTRYARRHQWQNGVFGHNSGPMVER*SEATQIVMGRVTNWCTGALLQKVGKL- |
Parental | ATAVGGGFLLLQIASHSGYVQIDWKRVEKDVN |
...VGGGF..LQIA.HSG.V..DWK......N | |
Retrocopy | --SVGGGFHILQIATHSGCVKVDWKLKRMQTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .58 RPM |
SRP017611_liver | 0 .00 RPM | 7 .63 RPM |