RetrogeneDB ID: | retro_mmur_699 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_4716:63835..64474(-) | ||
Located in intron of: | ENSMICG00000003593 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SMS | ||
Ensembl ID: | ENSMICG00000000192 | ||
Aliases: | None | ||
Description: | spermine synthase [Source:HGNC Symbol;Acc:11123] |
Percent Identity: | 96.71 % |
Parental protein coverage: | 58.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAARHSTLD-MLGAKADGETILKGLQSIFQEQGMVESVHTWQDHGYLATYTNKNGSFANLRIYPHGLVL |
MAAARHSTLD.ML.AKADGETILKGLQSIFQEQGMVESVHTWQDHGYLATYTNKNGSFANLRIYPHGLVL | |
Retrocopy | MAAARHSTLDFMLSAKADGETILKGLQSIFQEQGMVESVHTWQDHGYLATYTNKNGSFANLRIYPHGLVL |
Parental | LDLQSYDTDAQSKEEIDTLLNKVEERMKELNQDSTGRVKRLPPIVRGGAIDRYWPTADGRLVEYDIDEVV |
LDLQSYD.DAQSKEEIDTLLNKVEERMKELNQDSTG.VKRL.PIVRGGAIDRYWPTADG.LVEYDIDEVV | |
Retrocopy | LDLQSYDSDAQSKEEIDTLLNKVEERMKELNQDSTGWVKRLLPIVRGGAIDRYWPTADGCLVEYDIDEVV |
Parental | YDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVK |
YDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAIMGSGKEDYTGKDVLILG.GDGGILCEIVK | |
Retrocopy | YDEDSPYQNIKILHSKQFGNILILSGDVNLAESDLAYTRAIMGSGKEDYTGKDVLILGRGDGGILCEIVK |
Parental | LKP |
LKP | |
Retrocopy | LKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013284 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000033933 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006176 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000010098 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003123 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000000192 | 3 retrocopies |
retro_mmur_1421, retro_mmur_1484, retro_mmur_699 ,
|
Myotis lucifugus | ENSMLUG00000013185 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000007897 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009955 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006016 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000020182 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007688 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000012109 | 3 retrocopies |