RetrogeneDB ID: | retro_mmur_80 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_1131:143352..143731(-) | ||
Located in intron of: | ENSMICG00000017627 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA6 | ||
Ensembl ID: | ENSMICG00000000083 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 6 [Source:HGNC Symbol;Acc:9535] |
Percent Identity: | 76.38 % |
Parental protein coverage: | 73.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVK |
KY...Y.IPVD.LCK....I..VY.QNAEMRPLGCCMILI.I.EEQGPQVYKCDPAGYYCGFKATA.G.K | |
Retrocopy | KYLISYWIPVDVLCKITENIGCVYMQNAEMRPLGCCMILIDIEEEQGPQVYKCDPAGYYCGFKATAEGIK |
Parental | QTESTSF-LEKKVKKKFDWTF--TVETAITCLSTVLSIDFKPSEIEVGVVTVENPKF |
QTESTSF.L......KFDWTF..T.ETAI.CLSTVLSIDFKPSEIE..VVT.ENPKF | |
Retrocopy | QTESTSF>LXXXXEEKFDWTFEQTEETAIICLSTVLSIDFKPSEIEGEVVTAENPKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013409 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000004892 | 1 retrocopy | |
Felis catus | ENSFCAG00000026276 | 1 retrocopy | |
Homo sapiens | ENSG00000100902 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000016537 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000083 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000010228 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016544 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016288 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021024 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008492 | 10 retrocopies | |
Pan troglodytes | ENSPTRG00000006264 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000007114 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000011241 | 17 retrocopies |