Parental gene:

PSMA6, ENSCAFG00000013409

Aliases:None
Description:proteasome (prosome, macropain) subunit, alpha type, 6 [Source:HGNC Symbol;Acc:9535]
Organism:Dog (Canis familiaris)
Coordinates:8:14023353..14037973(+)


>ENSCAFG00000013409
ATGTCCCGTGGTTCCAGCGCTGGGTTTGACCGTCACATTACCATTTTTTCACCCGAGGGCCGGCTCTACCAAGTAGAATA
TGCTTTTAAGGCTATTAACCAGGGTGGCCTTACATCGGTAGCTGTCAGAGGGAAAGACTGTGCAGTAATTGTCACACAGA
AGAAAGTACCTGACAAATTATTGGATTCCAGCACAGTGACTCACTTATTCAAGATAACTGAAAACATTGGCTGTGTGATG
ACAGGAATGACAGCTGACAGCAGATCCCAGGTACAGAGGGCACGCTATGAGGCAGCTAATTGGAAATACAAGTATGGGTA
TGAGATTCCTGTGGACATGCTGTGCAAAAGAATTGCTGATATTTCTCAGGTCTACACACAGAATGCTGAAATGAGGCCTC
TCGGTTGTTGTATGATTTTAATTGGTATAGATGAAGAACAAGGCCCTCAGGTGTACAAGTGTGATCCTGCAGGTTACTAC
TGTGGGTTTAAAGCCACTGCAGCAGGAGTTAAACAAACGGAGTCAACCAGCTTCCTTGAAAAAAAAGTGAAGAAGAAATT
TGATTGGACATTTGAACAGACAGTGGAAACTGCAATTACTTGCCTATCAACTGTTCTATCGATTGATTTCAAACCTTCAG
AAATAGAAGTTGGAGTAGTTACAGTTGAAAATCCTAAATTCAGGATTCTTTCAGAAGCAGAGATTGACGCTCACCTTGTT
GCCCTAGCAGAGAGAGACTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 32 .93 RPM
SRP017611_brain 22 .87 RPM
SRP017611_kidney 62 .27 RPM
SRP017611_liver 12 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000004892 ortholog_one2one 1 retrogene
retro_etel_1775,
Felis catus ENSFCAG00000026276 ortholog_one2one 1 retrogene
retro_fcat_973,
Homo sapiens ENSG00000100902 ortholog_one2one 2 retrogenes
retro_hsap_1228, retro_hsap_4923,
Macropus eugenii ENSMEUG00000016537 ortholog_one2one 1 retrogene
retro_meug_1217,
Microcebus murinus ENSMICG00000000083 ortholog_one2one 4 retrogenes
retro_mmur_104, retro_mmur_165, retro_mmur_752, retro_mmur_80,
Myotis lucifugus ENSMLUG00000010228 ortholog_one2one 1 retrogene
retro_mluc_822,
Macaca mulatta ENSMMUG00000016544 ortholog_one2many 1 retrogene
retro_mmul_343,
Mustela putorius furo ENSMPUG00000016288 ortholog_one2one 1 retrogene
retro_mputfur_1089,
Mus musculus ENSMUSG00000021024 ortholog_one2one 1 retrogene
retro_mmus_654,
Otolemur garnettii ENSOGAG00000008492 ortholog_one2one 10 retrogenes
retro_ogar_1273, retro_ogar_1397, retro_ogar_1928, retro_ogar_1950, retro_ogar_2021, retro_ogar_2073, retro_ogar_2274, retro_ogar_2488, retro_ogar_2521, retro_ogar_3089,
Pan troglodytes ENSPTRG00000006264 ortholog_one2one 2 retrogenes
retro_ptro_3297, retro_ptro_844,
Rattus norvegicus ENSRNOG00000007114 ortholog_one2one 4 retrogenes
retro_rnor_1724, retro_rnor_1960, retro_rnor_854, retro_rnor_924,
Tupaia belangeri ENSTBEG00000011241 ortholog_one2one 17 retrogenes
retro_tbel_1304, retro_tbel_1415, retro_tbel_1789, retro_tbel_2028, retro_tbel_2466, retro_tbel_2519, retro_tbel_3227, retro_tbel_3280, retro_tbel_3535, retro_tbel_4181, retro_tbel_4183, retro_tbel_4357, retro_tbel_4465, retro_tbel_4495, retro_tbel_509, retro_tbel_602, retro_tbel_725,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_743 96.76 100.00
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2. retro_cfam_1581 94.97 72.76
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Download FASTA sequences of all ENSCAFG00000013409 retrocopies