RetrogeneDB ID: | retro_fcat_973 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:80034625..80035207(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000031604 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMA6 | ||
Ensembl ID: | ENSFCAG00000026276 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, alpha type, 6 [Source:HGNC Symbol;Acc:9535] |
Percent Identity: | 90.21 % |
Parental protein coverage: | 78.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLF |
.SRGSSAGFDRH.TIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKD.AVI.TQKKVPDKLLD.STVTH.F | |
Retrocopy | ISRGSSAGFDRHVTIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDRAVIATQKKVPDKLLDPSTVTHFF |
Parental | KITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMIL |
KITENIGCVMTGMTADSRSQVQRARYEAANWKY.YGYE.PVD..C.RIA.ISQVYTQNAEMRPLG.CMIL | |
Retrocopy | KITENIGCVMTGMTADSRSQVQRARYEAANWKYRYGYEMPVDTRCQRIAAISQVYTQNAEMRPLGWCMIL |
Parental | IGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQT |
IG.DEEQ.PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEK.V.KKFDWTFE.. | |
Retrocopy | IGVDEEQDPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKRVNKKFDWTFEHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 38 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 72 .04 RPM |
SRP017611_liver | 0 .30 RPM | 48 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013409 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000004892 | 1 retrocopy | |
Felis catus | ENSFCAG00000026276 | 1 retrocopy |
retro_fcat_973 ,
|
Homo sapiens | ENSG00000100902 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000016537 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000083 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000010228 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016544 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016288 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021024 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008492 | 10 retrocopies | |
Pan troglodytes | ENSPTRG00000006264 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000007114 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000011241 | 17 retrocopies |