Parental gene:

PSMA6, ENSPTRG00000006264

Aliases:None
Description:Pan troglodytes proteasome (prosome, macropain) subunit, alpha type, 6 (PSMA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001246657]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:14:34216325..34242089(+)


>ENSPTRG00000006264
ATGTCCCGTGGTTCCAGCGCCGGTTTTGACCGCCACATTACCATTTTTTCACCCGAGGGTAGGCTCTACCAAGTAGAATA
TGCTTTTAAGGCTATTAACCAGGGTGGCCTTACATCAGTAGCTGTCAGAGGGAAAGACTGTGCAGTAATTGTCACACAGA
AGAAAGTACCTGACAAATTATTGGATTCCAGCACGGTGACTCACTTATTCAAGATAACTGAAAACATTGGTTGTGTGATG
ACCGGAATGACAGCTGACAGCAGATCCCAGGTACAGAGGGCACGCTATGAGGCAGCTAACTGGAAATACAAGTATGGCTA
TGAGATTCCTGTGGACATGCTGTGTAAAAGAATTGCCGATATTTCTCAGGTCTACACACAGAATGCTGAAATGAGGCCTC
TTGGTTGTTGTATGATTTTAATTGGTATAGATGAAGAGCAAGGCCCTCAGGTATATAAGTGTGATCCTGCAGGTTACTAC
TGTGGGTTTAAAGCCACTGCAGCGGGAGTTAAACAAACTGAGTCAACCAGCTTCCTTGAAAAAAAAGTGAAGAAGAAATT
TGATTGGACATTTGAACAGACAGTGGAAACTGCAATTACATGCCTGTCTACTGTTCTATCAATTGATTTCAAACCTTCCG
AAATAGAAGTTGGAGTAGTGACAGTTGAAAATCCTAAATTCAGGATTCTTACAGAAGCAGAGATTGATGCTCACCTTGTT
GCTCTAGCAGAGAGAGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 37 .36 RPM
SRP007412_cerebellum 34 .20 RPM
SRP007412_heart 50 .92 RPM
SRP007412_kidney 52 .36 RPM
SRP007412_liver 95 .62 RPM
SRP007412_testis 167 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013409 ortholog_one2one 2 retrogenes
retro_cfam_1581, retro_cfam_743,
Echinops telfairi ENSETEG00000004892 ortholog_one2one 1 retrogene
retro_etel_1775,
Felis catus ENSFCAG00000026276 ortholog_one2one 1 retrogene
retro_fcat_973,
Homo sapiens ENSG00000100902 ortholog_one2one 2 retrogenes
retro_hsap_1228, retro_hsap_4923,
Macropus eugenii ENSMEUG00000016537 ortholog_one2one 1 retrogene
retro_meug_1217,
Microcebus murinus ENSMICG00000000083 ortholog_one2one 4 retrogenes
retro_mmur_104, retro_mmur_165, retro_mmur_752, retro_mmur_80,
Myotis lucifugus ENSMLUG00000010228 ortholog_one2one 1 retrogene
retro_mluc_822,
Macaca mulatta ENSMMUG00000016544 ortholog_one2many 1 retrogene
retro_mmul_343,
Mustela putorius furo ENSMPUG00000016288 ortholog_one2one 1 retrogene
retro_mputfur_1089,
Mus musculus ENSMUSG00000021024 ortholog_one2one 1 retrogene
retro_mmus_654,
Otolemur garnettii ENSOGAG00000008492 ortholog_one2one 10 retrogenes
retro_ogar_1273, retro_ogar_1397, retro_ogar_1928, retro_ogar_1950, retro_ogar_2021, retro_ogar_2073, retro_ogar_2274, retro_ogar_2488, retro_ogar_2521, retro_ogar_3089,
Rattus norvegicus ENSRNOG00000007114 ortholog_one2one 4 retrogenes
retro_rnor_1724, retro_rnor_1960, retro_rnor_854, retro_rnor_924,
Tupaia belangeri ENSTBEG00000011241 ortholog_one2one 17 retrogenes
retro_tbel_1304, retro_tbel_1415, retro_tbel_1789, retro_tbel_2028, retro_tbel_2466, retro_tbel_2519, retro_tbel_3227, retro_tbel_3280, retro_tbel_3535, retro_tbel_4181, retro_tbel_4183, retro_tbel_4357, retro_tbel_4465, retro_tbel_4495, retro_tbel_509, retro_tbel_602, retro_tbel_725,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_844 79.06 77.24
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2. retro_ptro_3297 93.50 100.00
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Download FASTA sequences of all ENSPTRG00000006264 retrocopies