RetrogeneDB ID: | retro_mmur_93 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_1224:608898..609349(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSMICG00000012458 | ||
Aliases: | None | ||
Description: | ribosomal protein L10a [Source:HGNC Symbol;Acc:10299] |
Percent Identity: | 86.27 % |
Parental protein coverage: | 92.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VLGDQQHCDEAKAVDIPHMDIEALKKLNKNK-KLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFP |
VLGDQQHCDEAKAVDIPHMDIEALKKLNK....LVKKLAKKYDAFLA.ESL..QIP.ILGPGLNKAGKFP | |
Retrocopy | VLGDQQHCDEAKAVDIPHMDIEALKKLNKSR<TLVKKLAKKYDAFLAPESLTEQIPPILGPGLNKAGKFP |
Parental | SLLTHNENMVAKVDEVKSTIKFQMKKV-LCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRAL |
.LLTHNEN.VAKVDEVKSTIKFQMKKV..CLAVAVGH.KMTDDELV..IHLAV.FLVSLLKKNW.NV.AL | |
Retrocopy | ALLTHNENTVAKVDEVKSTIKFQMKKV<SCLAVAVGHAKMTDDELVCSIHLAVDFLVSLLKKNWHNVLAL |
Parental | YIKSTMGKPQRLY |
YIK.TMGK.Q.LY | |
Retrocopy | YIKGTMGKSQHLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000012458 | 3 retrocopies |
retro_mmur_1381, retro_mmur_384, retro_mmur_93 ,
|
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037805 | 8 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001543 | 7 retrocopies |