RetrogeneDB ID: | retro_sscr_379 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:104525648..104526103(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSSSCG00000001543 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein L10a (RPL10A), mRNA. [Source:RefSeq mRNA;Acc:NM_001097477] |
Percent Identity: | 80.13 % |
Parental protein coverage: | 88.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKK-YDAFLASESLIKQIPRILGPGLNKA |
FSVC.L.DQ.H.DEAKAV.IPH.D.E..KKLNK.KKLVKKLAKK..DAFLASE.LIKQIP.ILGPGL.KA | |
Retrocopy | FSVCILRDQKHSDEAKAVAIPHVDTEGHKKLNKSKKLVKKLAKK<VDAFLASEALIKQIP*ILGPGLKKA |
Parental | GKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNV |
GKFPSLL..NEN..AK.D.VKSTI.FQM.KVLCLAVAVGH.KMTD...VYNIHLAVNFLVSLLKKNWQN. | |
Retrocopy | GKFPSLLIPNENVAAKIDKVKSTIRFQMRKVLCLAVAVGHMKMTD---VYNIHLAVNFLVSLLKKNWQNI |
Parental | RALYIKSTMGKPQRLY |
.ALYIKSTMGKPQ.L. | |
Retrocopy | QALYIKSTMGKPQCLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 412 .66 RPM |
SRP014902_testis | 0 .14 RPM | 595 .91 RPM |
SRP018288_heart | 0 .00 RPM | 480 .18 RPM |
SRP018288_kidney | 0 .10 RPM | 296 .50 RPM |
SRP018288_liver | 0 .16 RPM | 235 .55 RPM |
SRP018288_lung | 0 .00 RPM | 299 .98 RPM |
SRP018856_adipose | 0 .02 RPM | 773 .63 RPM |
SRP035408_brain | 0 .00 RPM | 256 .82 RPM |
SRP035408_liver | 0 .00 RPM | 287 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019494 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012921 | 3 retrocopies | |
Equus caballus | ENSECAG00000014090 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000012458 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037805 | 8 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016529 | 10 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001543 | 7 retrocopies |
retro_sscr_1169, retro_sscr_1174, retro_sscr_120, retro_sscr_246, retro_sscr_379 , retro_sscr_461, retro_sscr_465,
|