Parental gene: | RPL10A, ENSSSCG00000001543 |
| Aliases: | None |
| Description: | Sus scrofa ribosomal protein L10a (RPL10A), mRNA. [Source:RefSeq mRNA;Acc:NM_001097477] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 7:36106601..36108831(-) |
>ENSSSCG00000001543
ATGACCCACAGAAGGACAAACGCTTCTCGGGCACCGTCAGGCTTAAGTCTACTCCCCGCCCCATTCTCCGTGTGTGTCCT
GGGAGACCAGCAGCATTGTGATGAGGCCAAGGCTGTGGATATCCCGCACATGGACATCGAGGCACTGAAGAAACTCAACA
AGAATAAGAAACTGGTCAAGAAGCTGGCCAAGAAGTATGATGCCTTTTTGGCTTCAGAATCTCTAATCAAGCAGATTCCA
CGAATCCTGGGCCCTGGCCTGAATAAGGCTGGCAAATTCCCTTCCTTGCTGACCCACAATGAGAACATGGTGGCCAAAGT
TGATGAAGTGAAGTCCACGATCAAGTTCCAGATGAAGAAGGTGCTGTGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGA
CAGATGATGAGCTTGTGTACAACATCCACTTAGCTGTCAACTTCCTGGTGTCATTGCTCAAGAAAAATTGGCAGAACGTC
CGGGCTTTGTACATTAAGAGCACCATGGGCAAGCCCCAGCGCCTATACTAA
ATGACCCACAGAAGGACAAACGCTTCTCGGGCACCGTCAGGCTTAAGTCTACTCCCCGCCCCATTCTCCGTGTGTGTCCT
GGGAGACCAGCAGCATTGTGATGAGGCCAAGGCTGTGGATATCCCGCACATGGACATCGAGGCACTGAAGAAACTCAACA
AGAATAAGAAACTGGTCAAGAAGCTGGCCAAGAAGTATGATGCCTTTTTGGCTTCAGAATCTCTAATCAAGCAGATTCCA
CGAATCCTGGGCCCTGGCCTGAATAAGGCTGGCAAATTCCCTTCCTTGCTGACCCACAATGAGAACATGGTGGCCAAAGT
TGATGAAGTGAAGTCCACGATCAAGTTCCAGATGAAGAAGGTGCTGTGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGA
CAGATGATGAGCTTGTGTACAACATCCACTTAGCTGTCAACTTCCTGGTGTCATTGCTCAAGAAAAATTGGCAGAACGTC
CGGGCTTTGTACATTAAGAGCACCATGGGCAAGCCCCAGCGCCTATACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 412 .66 RPM |
| SRP014902_testis | 595 .91 RPM |
| SRP018856_adipose | 773 .63 RPM |
| SRP018288_kidney | 296 .50 RPM |
| SRP018288_lung | 299 .98 RPM |
| SRP018288_liver | 235 .55 RPM |
| SRP018288_heart | 480 .18 RPM |
| SRP035408_liver | 287 .98 RPM |
| SRP035408_brain | 256 .82 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000019494 | possible_ortholog | 4 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000012921 | possible_ortholog | 3 retrogenes | |
| Equus caballus | ENSECAG00000014090 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000005760 | ortholog_one2many | 6 retrogenes | |
| Microcebus murinus | ENSMICG00000012458 | possible_ortholog | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000013766 | ortholog_one2many | 2 retrogenes | |
| Mus musculus | ENSMUSG00000037805 | possible_ortholog | 8 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000014574 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016529 | possible_ortholog | 10 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000002047 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_120 | 90.23 | 97.16 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sscr_246 | 69.52 | 59.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_sscr_379 | 80.13 | 88.07 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_sscr_461 | 83.43 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_sscr_465 | 73.27 | 56.82 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_sscr_1169 | 75.48 | 86.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_sscr_1174 | 78.69 | 68.18 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000001543 retrocopies