RetrogeneDB ID: | retro_mmus_1304 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:100519583..100520221(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl10a | ||
Ensembl ID: | ENSMUSG00000037805 | ||
Aliases: | Rpl10a, CsA-19, Nedd6 | ||
Description: | ribosomal protein L10A [Source:MGI Symbol;Acc:MGI:1343877] |
Percent Identity: | 71.23 % |
Parental protein coverage: | 99.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLG-DQ |
SK.S..TLY.AV.EVL..NQ.K..KFLE.VEL.ISLKNYDP.K.K.FSGT.R.KSTP.PKF..C.LG.DQ | |
Retrocopy | SKISHNTLYKAVQEVLYRNQHKCCKFLEMVELKISLKNYDP-KYKQFSGTIRPKSTPCPKFWICILG<DQ |
Parental | QHCDEAKAVD-IPHMDIEAL-KKLNKNKKLVKKLAKKYDAF-LASESLIKQIPRILGPGLNKAGKFPSLL |
QHC.EAK....IPHM.I..L.K.LNKNKK.V.KLAKK..AF.LASESLI.QI..I.G..LNKAGKF.SLL | |
Retrocopy | QHCAEAKVMG<IPHMNIKEL<KNLNKNKKIVQKLAKKCGAF<LASESLITQITLIMGLELNKAGKFHSLL |
Parental | THNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKS |
T.NENMVAK.DE.KSTIKFQMKKVLCLA....HV.MT.D.LV.N..LAVNFL.S.L.KNWQN.RALYIKS | |
Retrocopy | TYNENMVAKTDEMKSTIKFQMKKVLCLAITGVHVMMTHDALVDNVDLAVNFLASFLNKNWQNTRALYIKS |
Parental | TMGKPQRLY |
TM.KPQ.LY | |
Retrocopy | TMDKPQHLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 27 .90 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .45 RPM |
SRP007412_heart | 0 .00 RPM | 34 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 40 .04 RPM |
SRP007412_liver | 0 .00 RPM | 39 .90 RPM |
SRP007412_testis | 0 .00 RPM | 16 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019494 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012921 | 3 retrocopies | |
Equus caballus | ENSECAG00000014090 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000012458 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037805 | 8 retrocopies |
retro_mmus_1110, retro_mmus_1304 , retro_mmus_1422, retro_mmus_149, retro_mmus_1737, retro_mmus_2038, retro_mmus_2652, retro_mmus_452,
|
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016529 | 10 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001543 | 7 retrocopies |