RetrogeneDB ID: | retro_mmus_1929 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:68554554..68554926(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000075312 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tax1bp3 | ||
Ensembl ID: | ENSMUSG00000040158 | ||
Aliases: | Tax1bp3, 1300011C24Rik, TIP-1 | ||
Description: | Tax1 (human T cell leukemia virus type I) binding protein 3 [Source:MGI Symbol;Acc:MGI:1923531] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSYTPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG |
MSYTPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG | |
Retrocopy | MSYTPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG |
Parental | LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS |
LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS | |
Retrocopy | LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .00 RPM |
SRP007412_heart | 0 .09 RPM | 7 .88 RPM |
SRP007412_kidney | 0 .15 RPM | 8 .60 RPM |
SRP007412_liver | 0 .00 RPM | 3 .11 RPM |
SRP007412_testis | 0 .05 RPM | 1 .69 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_88285 | 505 libraries | 428 libraries | 137 libraries | 2 libraries | 0 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000013801 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026421 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040158 | 1 retrocopy |
retro_mmus_1929 ,
|
Oryctolagus cuniculus | ENSOCUG00000023903 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017866 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022920 | 1 retrocopy |