RetrogeneDB ID: | retro_mmus_2062 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 2:91641683..91641923(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083832 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cox7b | ||
Ensembl ID: | ENSMUSG00000031231 | ||
Aliases: | Cox7b, 1100001F07Rik, 1110004F07Rik, C80563 | ||
Description: | cytochrome c oxidase subunit VIIb [Source:MGI Symbol;Acc:MGI:1913392] |
Percent Identity: | 92.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MLPLAKNALSRLQVRSIQQVVARQSHQKRAPSFHDKYGNAILAGGAIFCVSTWTYTATQIGIEWNMSPVG |
MLPLAKN.LSRLQV.SIQQVVARQSHQKR.PSFHDKYGNAILAGGAIFCVSTW.YTATQI.IEWN.SPVG | |
Retrocopy | MLPLAKNTLSRLQV*SIQQVVARQSHQKRTPSFHDKYGNAILAGGAIFCVSTWIYTATQIRIEWNLSPVG |
Parental | RVTPKEWRDQ |
RVTPKEWRDQ | |
Retrocopy | RVTPKEWRDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 100 .97 RPM |
SRP007412_cerebellum | 0 .09 RPM | 108 .08 RPM |
SRP007412_heart | 0 .09 RPM | 430 .53 RPM |
SRP007412_kidney | 0 .13 RPM | 240 .39 RPM |
SRP007412_liver | 0 .05 RPM | 132 .50 RPM |
SRP007412_testis | 0 .00 RPM | 3 .61 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF001XVA | POLR2A | 2:91641856..91642362 |
ENCFF001YKA | POLR2A | 2:91642083..91642449 |