RetrogeneDB ID: | retro_mmus_2400 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:143671123..143671675(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081227 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rab6a | ||
Ensembl ID: | ENSMUSG00000030704 | ||
Aliases: | Rab6a, 2610028L11Rik, AA419671, Rab6 | ||
Description: | RAB6A, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:894313] |
Percent Identity: | 90.81 % |
Parental protein coverage: | 88.94 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV |
Q..GKTSLITRF.YDSFDNTYQATIGIDFL.KTMY.EDRTVRLQLWDTAGQERFRSLIPSY..DST.A.V | |
Retrocopy | Q*LGKTSLITRFVYDSFDNTYQATIGIDFL*KTMYWEDRTVRLQLWDTAGQERFRSLIPSYTHDSTAA-V |
Parental | VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGY |
VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT.LADKRQVSIEEGERKAKE.NVMFIET.AKAGY | |
Retrocopy | VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTVLADKRQVSIEEGERKAKEMNVMFIETNAKAGY |
Parental | NVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVNEGGC |
.VKQLF..VAAALPGMESTQDR.REDMIDIKLE.PQEQPVNEGGC | |
Retrocopy | HVKQLFQCVAAALPGMESTQDRIREDMIDIKLENPQEQPVNEGGC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .14 RPM | 372 .99 RPM |
SRP007412_cerebellum | 0 .04 RPM | 226 .83 RPM |
SRP007412_heart | 0 .09 RPM | 56 .35 RPM |
SRP007412_kidney | 0 .08 RPM | 70 .97 RPM |
SRP007412_liver | 0 .00 RPM | 48 .55 RPM |
SRP007412_testis | 0 .00 RPM | 45 .01 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000175582 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030704 | 1 retrocopy |
retro_mmus_2400 ,
|
Nomascus leucogenys | ENSNLEG00000017098 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003663 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023497 | 3 retrocopies |