RetrogeneDB ID: | retro_itri_1743 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393709.1:668796..669273(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB6C | ||
Ensembl ID: | ENSSTOG00000023497 | ||
Aliases: | None | ||
Description: | RAB6C, member RAS oncogene family [Source:HGNC Symbol;Acc:16525] |
Percent Identity: | 77.44 % |
Parental protein coverage: | 77.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDT-A |
SAGGDF.NPLRKFK...LG.QS.GKTSL.TRFMYD..DNTYQATI.IDFLSKTMYLEDRT.RLQLWDT.. | |
Retrocopy | SAGGDFRNPLRKFK---LGKQSIGKTSLVTRFMYDRVDNTYQATICIDFLSKTMYLEDRTVRLQLWDT<R |
Parental | GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS-DVIIMLV-GNKTDLADKRQVSI |
GQ..FRSLIPSYIRDS..AV..YD....NSFQQTTK.IDDV...R.S....I....GNKTDLADKRQVSI | |
Retrocopy | GQKQFRSLIPSYIRDSTMAVLFYDNKIINSFQQTTK*IDDVCQNRKS>SDVIIMLVGNKTDLADKRQVSI |
Parental | EEGERKAKELNVMFIETSAKAGYN |
EEGERKAKELNVMFIET.AKAGYN | |
Retrocopy | EEGERKAKELNVMFIETRAKAGYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000992 | 1 retrocopy | |
Homo sapiens | ENSG00000175582 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030704 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017098 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010355 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000003663 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023497 | 3 retrocopies |
retro_itri_1743 , retro_itri_1827, retro_itri_1885,
|