RetrogeneDB ID: | retro_nleu_200 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397261.1:74135339..74135965(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000017972 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000154917 | ||
Ensembl ID: | ENSNLEG00000017098 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI-GIDFLSKTMYLEDRTVRLQ-LWD |
.SAGGDFGNPLRKFKLVFLGEQSV.KTSLITRFMYDSFD.TYQATI.GIDFLSKTMYLED.T.RL..LWD | |
Retrocopy | VSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFMYDSFDDTYQATI>GIDFLSKTMYLEDGTIRLR>LWD |
Parental | TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSI |
TAGQER.RSLIPSYIRDS..AVVVYDITNVNSFQQTTKWIDDVRTERGSDVII.LVGN.TDLADKRQ.SI | |
Retrocopy | TAGQERLRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQMSI |
Parental | EEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC |
EEGERKAKELNV.FIETSAKA.YNVKQLFRRVAAAL.GMESTQDRSRED..D.KLE.PQEQPVSEGGCSC | |
Retrocopy | EEGERKAKELNVVFIETSAKAAYNVKQLFRRVAAALMGMESTQDRSREDTSDKKLETPQEQPVSEGGCSC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000992 | 1 retrocopy | |
Homo sapiens | ENSG00000175582 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030704 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017098 | 1 retrocopy |
retro_nleu_200 ,
|
Ochotona princeps | ENSOPRG00000010355 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000003663 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023497 | 3 retrocopies |