RetrogeneDB ID: | retro_itri_1827 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393925.1:60305..60927(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB6C | ||
Ensembl ID: | ENSSTOG00000023497 | ||
Aliases: | None | ||
Description: | RAB6C, member RAS oncogene family [Source:HGNC Symbol;Acc:16525] |
Percent Identity: | 87.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA |
.S.GGDFGN.LRKFKLVFLGEQSVGKTSLITRFM.DSFDNTYQATIGIDFLSK.MYLED....LQLWDTA | |
Retrocopy | LSVGGDFGNLLRKFKLVFLGEQSVGKTSLITRFMNDSFDNTYQATIGIDFLSKIMYLEDPAV*LQLWDTA |
Parental | GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ-TTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIE |
GQERFR.LI.SYIRDS..AVVVYD.T.V.SFQQ..TKWI.DVRTERGSDVI.MLVGNKTDLADKRQVSIE | |
Retrocopy | GQERFRRLISSYIRDSTVAVVVYDMTKVHSFQQ<NTKWIADVRTERGSDVITMLVGNKTDLADKRQVSIE |
Parental | EGERKAKELNVMFIETSAKAGYNVKQLFRRV-AAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC |
EGERKAKELNVMFIET.AKAGYNVKQLFRRV..AALPGMESTQDRSREDM.DIKLEKPQE.PVSEG.CSC | |
Retrocopy | EGERKAKELNVMFIETRAKAGYNVKQLFRRV<PAALPGMESTQDRSREDMFDIKLEKPQEHPVSEGSCSC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000992 | 1 retrocopy | |
Homo sapiens | ENSG00000175582 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030704 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017098 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010355 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000003663 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023497 | 3 retrocopies |
retro_itri_1743, retro_itri_1827 , retro_itri_1885,
|