RetrogeneDB ID: | retro_mmus_2637 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:24118315..24118666(-) | ||
Located in intron of: | ENSMUSG00000028986 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gabarapl2 | ||
Ensembl ID: | ENSMUSG00000031950 | ||
Aliases: | None | ||
Description: | gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2 [Source:MGI Symbol;Acc:MGI:1890602] |
Percent Identity: | 99.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQL |
MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQL | |
Retrocopy | MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQL |
Parental | PSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF |
PSEKAIFLFVDKTVPQSSLTMGQLYEKEK.EDGFLYVAYSGENTFGF | |
Retrocopy | PSEKAIFLFVDKTVPQSSLTMGQLYEKEKEEDGFLYVAYSGENTFGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 29 .88 RPM |
SRP007412_cerebellum | 0 .13 RPM | 32 .09 RPM |
SRP007412_heart | 0 .19 RPM | 11 .49 RPM |
SRP007412_kidney | 0 .13 RPM | 17 .94 RPM |
SRP007412_liver | 0 .03 RPM | 9 .99 RPM |
SRP007412_testis | 0 .05 RPM | 5 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005453 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000031455 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014253 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002240 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000011981 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009894 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018567 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031812 | 4 retrocopies | |
Mus musculus | ENSMUSG00000031950 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000019425 | 1 retrocopy |