RetrogeneDB ID: | retro_mmus_2619 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:147408981..147409356(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000057157 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Map1lc3b | ||
Ensembl ID: | ENSMUSG00000031812 | ||
Aliases: | None | ||
Description: | microtubule-associated protein 1 light chain 3 beta [Source:MGI Symbol;Acc:MGI:1914693] |
Percent Identity: | 96.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRR |
MPSEKTFKQRRSF.QRVEDVRLIREQHPT.IP.IIERYK.EKQLPVLDKTKFLVPDHVNMSELIKIIRRR | |
Retrocopy | MPSEKTFKQRRSFVQRVEDVRLIREQHPTEIPGIIERYKWEKQLPVLDKTKFLVPDHVNMSELIKIIRRR |
Parental | LQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTAMAV |
LQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTAMAV | |
Retrocopy | LQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTAMAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 103 .89 RPM |
SRP007412_cerebellum | 0 .04 RPM | 94 .48 RPM |
SRP007412_heart | 0 .03 RPM | 80 .75 RPM |
SRP007412_kidney | 0 .15 RPM | 65 .43 RPM |
SRP007412_liver | 0 .00 RPM | 50 .19 RPM |
SRP007412_testis | 0 .14 RPM | 19 .58 RPM |