RetrogeneDB ID: retro_mputfur_993

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896987.1:6656453..6656743(-)
• Located in intron of: ENSMPUG00000005573

Retrocopy information

• Ensembl ID: ENSMPUG00000005599
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GABARAPL2
• Ensembl ID: ENSMPUG00000009894
• Aliases: None
• Description: GABA(A) receptor-associated protein-like 2 [Source:HGNC Symbol;Acc:13291]

Sequence

>retro_mputfur_993
ATGAAGCAGATGTTCAAGGAGGAACACTTGTTGGAATACAGATGTGTACAATCTGTGAAGACCCAAGTGAAATATCCCAA
CCAGGTTCCAGTGATTGTGGAAAAAGTCTCAGGCTCTCAGATTGTTGACAATGACAAACAGAAGTATCTGGTTCCATCTG
ACATCACTGTGGCTCAGTTCATGGGGATCATCAGGAAAAGAAGCCAGCTTCCCTCTGAAAAGGCAATTTTCCTATTTGTG
GGCAAACTGTCCCACAGTCCAGCCTAACTAAGGGACAGCTTTAGAAGAAA

Alignment

ORF - retro_mputfur_993 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.59 %
• Parental protein coverage: 80.83 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQL
          MK.MFKE.H.LE.RCV.S.K...KYP..VPVIVEKVSGSQIVD.DK.KYLVPSDITVAQFM.IIRKR.QL
Retrocopy MKQMFKEEHLLEYRCVQSVKTQVKYPNQVPVIVEKVSGSQIVDNDKQKYLVPSDITVAQFMGIIRKRSQL

Parental  PSEKAIFLFVDK-TVPQSSLTMGQLYEK
          PSEKAIFLFV.K.TVPQSSLT.GQL..K
Retrocopy PSEKAIFLFVGK<TVPQSSLTKGQL*KK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_993 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_993 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005453	2 retrocopies	retro_amel_1054, retro_amel_1238,
Canis familiaris	ENSCAFG00000031455	1 retrocopy	retro_cfam_639,
Callithrix jacchus	ENSCJAG00000014253	1 retrocopy	retro_cjac_146,
Dasypus novemcinctus	ENSDNOG00000002240	2 retrocopies	retro_dnov_1755, retro_dnov_2332,
Microcebus murinus	ENSMICG00000011981	1 retrocopy	retro_mmur_1473,
Mustela putorius furo	ENSMPUG00000009894	1 retrocopy	retro_mputfur_993 ,
Mustela putorius furo	ENSMPUG00000010473	2 retrocopies	retro_mputfur_1290, retro_mputfur_258,
Mustela putorius furo	ENSMPUG00000017814	1 retrocopy	retro_mputfur_1049,
Mus musculus	ENSMUSG00000031950	5 retrocopies	retro_mmus_2637, retro_mmus_2655, retro_mmus_3240, retro_mmus_456, retro_mmus_506,
Rattus norvegicus	ENSRNOG00000019425	1 retrocopy	retro_rnor_57,