RetrogeneDB ID: | retro_mmus_772 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:23558448..23558726(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Selk | ||
Ensembl ID: | ENSMUSG00000042682 | ||
Aliases: | Selk, 1110001C03Rik, AA673253, HSPC030, Hsp30 | ||
Description: | selenoprotein K [Source:MGI Symbol;Acc:MGI:1931466] |
Percent Identity: | 84.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MVYISNGQVLDSRNQS-PWRVSFLTDFFWGIAEFVVFFFKTLLQQDVKKRRGYGSSSDSRYDDGRGPPGN |
MVYISNG.VLDS.NQS.P....F.TDFFWGIAEFVVFFFKTLLQQDVKKRRGY.SSS.SRYD.GR.PPGN | |
Retrocopy | MVYISNG*VLDSQNQS<PMEI-FITDFFWGIAEFVVFFFKTLLQQDVKKRRGYRSSSGSRYDGGREPPGN |
Parental | PPRRMGRISHLRGPSPPPMAGGUGR |
PPRRMG.ISHL.GPSPPPMAGG.GR | |
Retrocopy | PPRRMGWISHLCGPSPPPMAGG*GR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .33 RPM | 44 .39 RPM |
SRP007412_cerebellum | 0 .17 RPM | 33 .22 RPM |
SRP007412_heart | 0 .00 RPM | 28 .98 RPM |
SRP007412_kidney | 0 .06 RPM | 32 .63 RPM |
SRP007412_liver | 0 .05 RPM | 31 .35 RPM |
SRP007412_testis | 0 .00 RPM | 31 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007612 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000007172 | 4 retrocopies | |
Homo sapiens | ENSG00000113811 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000000681 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000017513 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012622 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000019272 | 4 retrocopies | |
Mus musculus | ENSMUSG00000042682 | 9 retrocopies |
retro_mmus_1015, retro_mmus_1017, retro_mmus_1019, retro_mmus_1106, retro_mmus_1855, retro_mmus_2704, retro_mmus_2705, retro_mmus_3495, retro_mmus_772 ,
|
Nomascus leucogenys | ENSNLEG00000026533 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000002266 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000025894 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000015030 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016291 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014624 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000011459 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000506 | 2 retrocopies |