RetrogeneDB ID: | retro_cpor_467 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_16:17207575..17207837(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000007172 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.67 % |
Parental protein coverage: | 96.7 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MVYISNGQVLDNRSQSPWRLS-LITDFFWGIAEFVVLFFKTLLQQDVKKGRGYRNSSDSRYDDGRGP-PG |
MVYISNGQVLDN...S.WRL..LITDFF.GI..FVVLFFKTLL.QDVKKG..YRNSSDSRYDDGRGP..G | |
Retrocopy | MVYISNGQVLDNCNESLWRLY<LITDFF*GITKFVVLFFKTLL*QDVKKGKNYRNSSDSRYDDGRGP<TG |
Parental | NPPRRMGRINHLQGPSPPPM |
NPP.RMG.INHL..P..PP. | |
Retrocopy | NPP*RMGQINHLYDPRSPPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 6 .84 RPM |
SRP017611_kidney | 0 .73 RPM | 7 .64 RPM |
SRP017611_liver | 0 .17 RPM | 5 .18 RPM |
SRP040447_lung | 0 .48 RPM | 13 .06 RPM |
SRP040447_skeletal_muscle | 0 .16 RPM | 9 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007612 | 8 retrocopies | |
Cavia porcellus | ENSCPOG00000007172 | 4 retrocopies | |
Homo sapiens | ENSG00000113811 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000000681 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000017513 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012622 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000019272 | 4 retrocopies | |
Mus musculus | ENSMUSG00000042682 | 9 retrocopies | |
Nomascus leucogenys | ENSNLEG00000026533 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000002266 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000025894 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000015030 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016291 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014624 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000011459 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000506 | 2 retrocopies |