RetrogeneDB ID: retro_mputfur_1360

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897096.1:2380361..2380843(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PRDX5
• Ensembl ID: ENSMPUG00000012907
• Aliases: None
• Description: peroxiredoxin 5 [Source:HGNC Symbol;Acc:9355]

Sequence

>retro_mputfur_1360
TCTGTAGCATGGGTGGTGACAAGAGCAGGAGGGTGCCAGCAATAAAACAGGGAATAGATGCTTGGTGAGGCCTCAGTTTC
AGCAGCGCTTTCTCAGACATGGCCCCAATCAAGTTGGGGATGCCATCGCTTCACTGGTGGCTATTGAAGGGGAGCCTGGG
AACAAGGTGAACCTGGCAGAGCTGTTCAAAGGCACAGAGTGCTGTTTGGAAAGCCCAGGGTCTTTAGTCCAGGCTGTTCC
AAGACCCACTTGTCAGGGTTTGTGGAGCAGGCTGAGGCTCTGAGGGCCAAGGGGGTTCAGGTGGTAGTATGTCTGAGTAT
TGATGATGCTTTTGTGACTAAACTGTGGGAACCAGTTCACAATTCAGGAGGCAAGGTTATCCTCTTGGCTGACTCTACTG
GGACCTTTGGGAAGGAAACTGATTTGTTACTAGATGATTCATTGGTGGTGTCTTTGGAAATTGCCAGCTCAAAAGGTTCT
CC

Alignment

ORF - retro_mputfur_1360 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.87 %
• Parental protein coverage: 93.68 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  SAAAAASRAGGCRQPGREWTLGGAC-GFRSAASAMAPIK-VGDTIPSVVVFEGEPKNQVNLAELFKGKKG
          S.A....RAGGC.Q..RE..LG.A...F.SA.S.MAPIK.VGD.I.S.V..EGEP.N.VNLAELFKG...
Retrocopy SVAWVVTRAGGCQQ*NRE*MLGEAS<SFSSAFSDMAPIK<VGDAIASLVAIEGEPGNKVNLAELFKGTEC

Parental  VLFGVPGA-FTPGCSKTHLPGFVEQAEALKARGVQVVACLSVNDVFVTEEWGRAHNARGKVRLLADPTGA
          .L...PG..F.PGCSKTHL.GFVEQAEAL.A.GVQVV.CLS..D.FVT..W...HN..GKV.LLAD.TG.
Retrocopy CLES-PGS<FSPGCSKTHLSGFVEQAEALRAKGVQVVVCLSIDDAFVTKLWEPVHNSGGKVILLADSTGT

Parental  FGKETDLLLDDSLV-SLFGNHRLKRFS
          FGKETDLLLDDSLV...FGN..LKRFS
Retrocopy FGKETDLLLDDSLV<GVFGNCQLKRFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1360 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1360 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017959	1 retrocopy	retro_amel_753,
Bos taurus	ENSBTAG00000008648	1 retrocopy	retro_btau_1364,
Callithrix jacchus	ENSCJAG00000018014	1 retrocopy	retro_cjac_3013,
Dasypus novemcinctus	ENSDNOG00000004647	1 retrocopy	retro_dnov_2664,
Equus caballus	ENSECAG00000017747	2 retrocopies	retro_ecab_823, retro_ecab_844,
Echinops telfairi	ENSETEG00000000264	3 retrocopies	retro_etel_1821, retro_etel_662, retro_etel_740,
Homo sapiens	ENSG00000126432	1 retrocopy	retro_hsap_408,
Gorilla gorilla	ENSGGOG00000001337	1 retrocopy	retro_ggor_404,
Loxodonta africana	ENSLAFG00000025661	2 retrocopies	retro_lafr_132, retro_lafr_250,
Macaca mulatta	ENSMMUG00000013397	1 retrocopy	retro_mmul_504,
Mustela putorius furo	ENSMPUG00000012907	1 retrocopy	retro_mputfur_1360 ,
Nomascus leucogenys	ENSNLEG00000005003	2 retrocopies	retro_nleu_1007, retro_nleu_2228,
Procavia capensis	ENSPCAG00000010811	1 retrocopy	retro_pcap_144,
Pongo abelii	ENSPPYG00000003106	1 retrocopy	retro_pabe_310,
Pan troglodytes	ENSPTRG00000003835	1 retrocopy	retro_ptro_313,
Sus scrofa	ENSSSCG00000013030	2 retrocopies	retro_sscr_1041, retro_sscr_888,