RetrogeneDB ID: | retro_mputfur_607 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896926.1:9511388..9512720(+) | ||
Located in intron of: | ENSMPUG00000009987 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBB | ||
Ensembl ID: | ENSMPUG00000011690 | ||
Aliases: | None | ||
Description: | tubulin, beta class I [Source:HGNC Symbol;Acc:20778] |
Percent Identity: | 96.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEP |
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEP | |
Retrocopy | MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEP |
Parental | GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLG |
GTM.SVRSGPFGQIFRPDNFVF.QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLG | |
Retrocopy | GTMYSVRSGPFGQIFRPDNFVFSQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLG |
Parental | GGTGSGMGTLLISKIREEYPDRIMNIFSVVPSPRVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI |
GGTGSGMGTLLISKIREEYPDRIMN.F.VVPSP.VSDTVVEPYNATLS.HQLVENTDETYCIDNEALYDI | |
Retrocopy | GGTGSGMGTLLISKIREEYPDRIMNTFNVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDI |
Parental | CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ |
CFRTLKLTTPTY.DLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTS.GSQQ | |
Retrocopy | CFRTLKLTTPTYRDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSHGSQQ |
Parental | YRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVK |
YRALTVPELTQQVFDAKNMMAACDPRHGRYLTVA.VF.G.MSMKEVDEQMLNVQNKNSSYFVEWIPNNVK | |
Retrocopy | YRALTVPELTQQVFDAKNMMAACDPRHGRYLTVATVFHGWMSMKEVDEQMLNVQNKNSSYFVEWIPNNVK |
Parental | TAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS |
TAV.DIPPRGLKMAVTFIGNSTAIQELFK.ISEQFTAMFRRKAFLHWYTGEGMD.MEFTEAESNMND.VS | |
Retrocopy | TAV*DIPPRGLKMAVTFIGNSTAIQELFKHISEQFTAMFRRKAFLHWYTGEGMDKMEFTEAESNMNDHVS |
Parental | EYQQYQDATAEEEEDFGEEAEEEA |
EYQQYQDAT.EEEEDFGEEAEEEA | |
Retrocopy | EYQQYQDATTEEEEDFGEEAEEEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006969 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000000443 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023684 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000006958 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011690 | 3 retrocopies |
retro_mputfur_1123, retro_mputfur_607 , retro_mputfur_807,
|
Nomascus leucogenys | ENSNLEG00000005348 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000032213 | 1 retrocopy |