RetrogeneDB ID: | retro_mputfur_807 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896950.1:8778552..8779291(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBB | ||
Ensembl ID: | ENSMPUG00000011690 | ||
Aliases: | None | ||
Description: | tubulin, beta class I [Source:HGNC Symbol;Acc:20778] |
Percent Identity: | 75.5 % |
Parental protein coverage: | 55.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | TYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA-GNNWAK |
T.H.D.....D.IS.YYNEATGGKYVP.AILVDLEP.TMDSV.SGP.GQIFRPD.FVF.QS...GNN.AK | |
Retrocopy | TFHPDGPQAHDHISLYYNEATGGKYVPCAILVDLEPRTMDSVPSGPLGQIFRPDSFVFDQSKK<GNN*AK |
Parental | GHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNIFSVVPSP |
GH.TE.AELVDSVLD.VRK.A.SCDCL..FQLTHSLGGGTGSG..TLLISKI..EYP..IMN.FSVV.SP | |
Retrocopy | GHCTERAELVDSVLDMVRKGAKSCDCLKAFQLTHSLGGGTGSGTVTLLISKIQKEYPNCIMNTFSVVLSP |
Parental | RVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP |
..SDTVV.PYN...S.HQL.ENTDETYC.DNEALYDICF.TLKLT.PTY.DLNHLVSATMS...TCL.FP | |
Retrocopy | KASDTVVTPYNVIFSIHQLLENTDETYCFDNEALYDICFCTLKLTMPTYRDLNHLVSATMSDLNTCLCFP |
Parental | GQLNADLRKLAVNMVPFPRLHFFMPGFA-PLTSRGSQQY |
.QL.ADL.KLA..M.PF..LHFFMPGFA..LTS.GSQQY | |
Retrocopy | DQLSADLHKLANSMLPFTSLHFFMPGFA<TLTSHGSQQY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006969 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000000443 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023684 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000006958 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011690 | 3 retrocopies |
retro_mputfur_1123, retro_mputfur_607, retro_mputfur_807 ,
|
Nomascus leucogenys | ENSNLEG00000005348 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000032213 | 1 retrocopy |