RetrogeneDB ID: | retro_nleu_2800 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397435.1:281399..282394(-) | ||
Located in intron of: | ENSNLEG00000013158 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSFL1C | ||
Ensembl ID: | ENSNLEG00000009341 | ||
Aliases: | None | ||
Description: | NSFL1 (p97) cofactor (p47) [Source:HGNC Symbol;Acc:15912] |
Percent Identity: | 86.83 % |
Parental protein coverage: | 96.52 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | QIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQ |
QIALASFY.D...EDI.TISQAT..SVSRGTAPSDNRVTSFRD..HDQDEDEEEEEGQRF.AG.SERSGQ | |
Retrocopy | QIALASFY-DTEKEDIITISQATSRSVSRGTAPSDNRVTSFRDFTHDQDEDEEEEEGQRFHAGASERSGQ |
Parental | QIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQ |
Q.VGPPRKKSPNELVDDLFKGAKEHGAVAVERVTK.PGETS.PRPFAGGGY.LG.APEEESAYV.GEKRQ | |
Retrocopy | QTVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKRPGETSTPRPFAGGGYGLGTAPEEESAYVTGEKRQ |
Parental | HSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDME-DHRDEDF |
HSSQDVHVVLKL.KSGFSLDNGELRSY.DPSNAQFLESI.RGEVPAEL.RLAH.GQ.NLDME..H.DEDF | |
Retrocopy | HSSQDVHVVLKLCKSGFSLDNGELRSY*DPSNAQFLESIHRGEVPAELWRLAHSGQANLDME<GHQDEDF |
Parental | VKPKGAFRAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFN |
.K.K.AF.AFTGEGQKL.STA..VLST.SP.Q.AENEAKASSSILI.ESE.TTNIQIRLADG.RLVQKFN | |
Retrocopy | MKSK*AFKAFTGEGQKLSSTAL*VLSTISPVQLAENEAKASSSILIVESETTTNIQIRLADGVRLVQKFN |
Parental | HSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQ |
HSHRIS.I.LFIVDARPAMAATSFILMTTFPNKELADES.TLKEANLLNA.I.Q | |
Retrocopy | HSHRISNIQLFIVDARPAMAATSFILMTTFPNKELADESWTLKEANLLNAAIMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000088833 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013539 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003940 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015994 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027455 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000751 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001356 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009341 | 1 retrocopy |
retro_nleu_2800 ,
|
Otolemur garnettii | ENSOGAG00000002630 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010851 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013164 | 1 retrocopy |