Parental gene:

NSFL1C, ENSG00000088833

Aliases:NSFL1C, P47, UBX1, UBXD10, UBXN2C, dJ776F14.1
Description:NSFL1 (p97) cofactor (p47) [Source:HGNC Symbol;Acc:15912]
Organism:Human (Homo sapiens)
Coordinates:20:1422806..1448417(-)


>ENSG00000088833
ATGGCGGCGGAGCGACAGGAGGCGCTGAGGGAGTTCGTGGCGGTGACGGGCGCCGAGGAGGACCGGGCCCGCTTCTTTCT
CGAGTCGGCCGGCTGGGACTTGCAGATCGCGCTAGCGAGCTTTTATGAGGACGGAGGGGATGAAGACATTGTGACCATTT
CGCAGGCAACCCCCAGTTCAGTGTCCAGAGGCACAGCCCCCAGTGATAATAGAGTGACATCCTTCAGAGACCTCATTCAT
GACCAAGATGAAGATGAGGAGGAAGAGGAAGGCCAGAGGAGCAGGTTTTATGCTGGGGGCTCAGAGAGAAGTGGACAGCA
GATTGTTGGCCCTCCCAGGAAGAAAAGTCCCAACGAGCTGGTGGATGATCTCTTTAAAGGTGCCAAAGAGCATGGAGCTG
TAGCTGTGGAGCGAGTGACCAAGAGCCCTGGAGAGACCAGTAAACCGAGACCATTTGCAGGAGGTGGCTACCGCCTTGGG
GCAGCACCAGAGGAAGAGTCTGCCTATGTGGCAGGAGAAAAGAGGCAGCATTCCAGCCAAGATGTTCATGTAGTATTGAA
ACTCTGGAAGAGTGGATTCAGCCTGGATAATGGAGAACTCAGAAGCTACCAAGACCCATCCAATGCCCAGTTTCTGGAGT
CTATCCGCAGAGGGGAGGTGCCAGCAGAGCTTCGGAGGCTAGCTCACGGTGGACAGGTGAACTTGGATATGGAGGACCAT
CGGGACGAGGACTTTGTGAAGCCCAAAGGAGCCTTCAAAGCCTTCACTGGCGAGGGTCAGAAACTGGGCAGCACTGCCCC
CCAGGTGTTGAGTACCAGCTCTCCAGCCCAACAGGCAGAAAATGAAGCCAAAGCCAGCTCTTCCATCTTAATCGACGAAT
CAGAGCCTACCACAAACATCCAAATTCGGCTTGCAGACGGCGGGAGGCTGGTGCAGAAATTTAACCACAGCCACAGGATC
AGCGACATCCGACTCTTCATCGTGGATGCCCGGCCAGCCATGGCTGCCACCAGCTTTATCCTCATGACTACTTTCCCGAA
CAAAGAGCTGGCTGATGAGAGCCAGACCCTGAAGGAAGCCAACCTGCTCAATGCTGTCATCGTGCAGCGGTTAACATAA

Library Parental gene expression (RPM)
bodymap2_liver 30 .12 RPM
bodymap2_lung 42 .70 RPM
bodymap2_breast 48 .37 RPM
bodymap2_adipose 60 .91 RPM
bodymap2_adrenal 50 .93 RPM
bodymap2_skeletal_muscle 79 .46 RPM
bodymap2_thyroid 56 .12 RPM
bodymap2_prostate 62 .89 RPM
bodymap2_colon 43 .95 RPM
bodymap2_testis 59 .52 RPM
bodymap2_brain 44 .25 RPM
bodymap2_heart 33 .38 RPM
bodymap2_white_blood_cells 43 .27 RPM
bodymap2_lymph_node 40 .17 RPM
bodymap2_ovary 60 .55 RPM
bodymap2_kidney 34 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000173960 within_species_paralog 1 retrogene
retro_hsap_2025,
Homo sapiens ENSG00000215114 within_species_paralog 1 retrogene
retro_hsap_3923,
Gorilla gorilla ENSGGOG00000013539 ortholog_one2one 1 retrogene
retro_ggor_2718,
Macropus eugenii ENSMEUG00000003940 ortholog_one2one 2 retrogenes
retro_meug_1890, retro_meug_605,
Macaca mulatta ENSMMUG00000015994 ortholog_one2one 1 retrogene
retro_mmul_2337,
Mus musculus ENSMUSG00000027455 ortholog_one2one 1 retrogene
retro_mmus_2565,
Nomascus leucogenys ENSNLEG00000009341 ortholog_one2one 1 retrogene
retro_nleu_2800,
Otolemur garnettii ENSOGAG00000002630 ortholog_one2one 2 retrogenes
retro_ogar_1144, retro_ogar_1609,
Pongo abelii ENSPPYG00000010851 ortholog_one2one 1 retrogene
retro_pabe_3324,
Pan troglodytes ENSPTRG00000013164 ortholog_one2one 1 retrogene
retro_ptro_2745,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4050 86.34 98.92
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Download FASTA sequences of all ENSG00000088833 retrocopies