RetrogeneDB ID: | retro_nleu_3117 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL400151.1:3935..5171(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000018692 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IDH1 | ||
Ensembl ID: | ENSNLEG00000007143 | ||
Aliases: | None | ||
Description: | Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:G1R682] |
Percent Identity: | 93.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVG |
MSKKISGGSVVEMQ.DEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTK.AAEAIKKYNVG | |
Retrocopy | MSKKISGGSVVEMQ-DEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKVAAEAIKKYNVG |
Parental | V-CATITPDEKR-EEFKLKQMWKSPNG-HHTKY-FWVAQ-FFREAIIC-NIPRLVSGWVKPIIIGRHAYG |
V.CATITPDEKR.EEFKLKQMWKSPNG.HHTKY.FWVA...FREAIIC.NIP.LVSGWVKPIIIGRHAYG | |
Retrocopy | VKCATITPDEKRAEEFKLKQMWKSPNG<HHTKY<FWVAR<VFREAIICKNIPWLVSGWVKPIIIGRHAYG |
Parental | DQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWP |
DQYRA.DFVV...GKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWP | |
Retrocopy | DQYRANDFVVLA-GKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMALSKGWP |
Parental | LYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDV |
LY.STKNTILKKYDGRFKDIFQEIYDKQYKSQ.E.QKIWYEHRLIDD.VAQAMKSEGGFIWACKNYDGD. | |
Retrocopy | LYVSTKNTILKKYDGRFKDIFQEIYDKQYKSQSEGQKIWYEHRLIDDTVAQAMKSEGGFIWACKNYDGDT |
Parental | QSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKL |
QSDSVAQGYGSLGMMTSVLVCPDGKTVEAEA..GTVT.HY.MYQKGQET.TNPIASIFAWTRGLAHRAKL | |
Retrocopy | QSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAVQGTVTCHYHMYQKGQETATNPIASIFAWTRGLAHRAKL |
Parental | DNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKIKLAQAKL |
DNNKELAFFANALEEVSIETIEAGFMTKDLAACIKG.PNVQRSDYLNT.EFMDKLGENLKIKLAQAKL | |
Retrocopy | DNNKELAFFANALEEVSIETIEAGFMTKDLAACIKGVPNVQRSDYLNTLEFMDKLGENLKIKLAQAKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020527 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004574 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013587 | 1 retrocopy | |
Homo sapiens | ENSG00000138413 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012619 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009797 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016077 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007143 | 3 retrocopies |
retro_nleu_1169, retro_nleu_2328, retro_nleu_3117 ,
|
Otolemur garnettii | ENSOGAG00000014848 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000013125 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012865 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000023264 | 1 retrocopy |