Parental gene:

IDH1, ENSCPOG00000013587

Aliases:None
Description:Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:H0VP28]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_13:41687355..41701856(-)


>ENSCPOG00000013587
ATGTCCAGAAAGATCCACGGCGGTTCGGTGGTAGAGATGCAAGGAGATGAGATGACGCGCGTCATTTGGGAACTGATTAA
AGAAAAGCTCATTTTTCCCTACGTGGAACTGGATCTACACAGCTATGACTTAGGTATAGAGAATCGGGATGCCACCCACG
ACCAAGTCACCAAGGATGCTGCCGAAGCTATAAAGAAGTACAACGTGGGCATCAAGTGTGCCACCATCACCCCCGACGAG
AAGAGGGTTGAGGAGTTCAAGTTGAAACAAATGTGGAAATCACCCAATGGCACCATCCGAAATATTCTAGGGGGCACTGT
CTTCAGAGAAGCTATTATCTGTAAAAATATTCCCCGCCTAGTGTCGGGGTGGCTAAAACCCATCATCATAGGCCGTCATG
CATATGGGGATCAATATAGAGCAACTGATTTTGTCGTTCCCGGGCCTGGGAAAGTAGAGATAACCTACACCCCAAGCGAT
GGAAGCCAGAAGGTGACATACCTGGTCCATAACTTTGAAGAGGGTGGTGGCGTTGCCATGGGGATGTACAATCAAGATAA
GTCCATTGAAGACTTTGCGCACAGTTCCTTCCAGATGGCTCTGTCTAAGGGTTGGCCTCTGTATCTGAGCACCAAAAACA
CTATTCTGAAGAAATATGATGGCCGCTTTAAAGACATCTTTCAGGAGATATATGACAAGCAGTACAAGTCCCAGTTTGAA
GCCCAGAAGATCTGGTACGAGCACAGGCTCATCGATGATATGGTGGCCCAAGCTATGAAGTCAGAGGGGGGCTTCATCTG
GGCCTGTAAGAACTACGACGGTGACGTCCAGTCGGATTCTGTGGCCCAAGGTTACGGCTCCCTTGGCATGATGACCAGCG
TGCTGGTTTGTCCGGATGGCAAGACGGTAGAAGCGGAGGCTGCCCACGGGACTGTGACACGCCACTACCGCATGTACCAG
AAGGGGCAGGAGACCTCCACCAATCCTATTGCGTCCATTTTTGCCTGGACCAGAGGGTTGGCCCACAGAGCGAAGCTGGA
CAACAATAAGGAGCTCGACTTCTTTGCCAAAGCTTTGGAAGAAGTCTGCATCGAGACCATTGAGGCTGGCTTCATGACCA
AGGACTTGGCTGCTTGCATTAAAGGGTTACCCAATGTGCAACGTTCTGACTATTTGAATACATTTGAGTTCATGGACAAA
CTCGGAGAAAACTTGAAGACAAAACTAGCTCAGGCCAAACTCTAA

Library Parental gene expression (RPM)
SRP017611_liver 475 .23 RPM
SRP017611_kidney 313 .96 RPM
SRP017611_brain 16 .51 RPM
SRP040447_lung 37 .02 RPM
SRP040447_skeletal_muscle 18 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020527 ortholog_one2one 1 retrogene
retro_btau_1235,
Choloepus hoffmanni ENSCHOG00000004574 ortholog_one2one 2 retrogenes
retro_chof_2158, retro_chof_897,
Homo sapiens ENSG00000138413 ortholog_one2one 1 retrogene
retro_hsap_3554,
Gorilla gorilla ENSGGOG00000012619 ortholog_one2one 1 retrogene
retro_ggor_2400,
Microcebus murinus ENSMICG00000009797 ortholog_one2one 1 retrogene
retro_mmur_1364,
Macaca mulatta ENSMMUG00000016077 ortholog_one2one 1 retrogene
retro_mmul_1817,
Nomascus leucogenys ENSNLEG00000007143 ortholog_one2one 3 retrogenes
retro_nleu_1169, retro_nleu_2328, retro_nleu_3117,
Otolemur garnettii ENSOGAG00000014848 ortholog_one2one 4 retrogenes
retro_ogar_1488, retro_ogar_2270, retro_ogar_2925, retro_ogar_3057,
Pongo abelii ENSPPYG00000013125 ortholog_one2one 2 retrogenes
retro_pabe_2935, retro_pabe_926,
Pan troglodytes ENSPTRG00000012865 ortholog_one2one 1 retrogene
retro_ptro_2415,
Sus scrofa ENSSSCG00000023264 ortholog_one2one 1 retrogene
retro_sscr_549,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1010 69.91 50.72
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Download FASTA sequences of all ENSCPOG00000013587 retrocopies