RetrogeneDB ID: | retro_cpor_1010 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:24207698..24208319(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IDH1 | ||
Ensembl ID: | ENSCPOG00000013587 | ||
Aliases: | None | ||
Description: | Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:H0VP28] |
Percent Identity: | 69.91 % |
Parental protein coverage: | 50.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | SKGWPLYLSTKNTILKKYDGRF-KDIFQEIYDKQYKSQFEAQKIWYEHRLIDD-MVAQAMKSEGGF-IWA |
SK...LYLSTKN.ILKKY.G.F.KDIFQEI.DKQ.KSQFE.QK..Y.H.LI.D..V.Q.MKSE..F.... | |
Retrocopy | SKS*LLYLSTKNSILKKY-GCF>KDIFQEIHDKQCKSQFESQKTQYKHTLIHD<WVVQGMKSERDF<LTP |
Parental | CKNYDGDVQSDSVAQGYGSLGMMT-SVLVCPDGKTVEAEAAHGTVTRHYRMYQK-GQETSTNPIASIFAW |
.KNY..D.QSDSVAQGYG.LGM.T..V.VCPD.K..EAEAAHGTV..HY.MYQ...QET....IASIFAW | |
Retrocopy | *KNYSDDIQSDSVAQGYGCLGMIT>GVPVCPDVKIIEAEAAHGTVACHYFMYQR<DQETPC--IASIFAW |
Parental | TRGLAHRAKLDNNKELDFFAKALEEVCIETI-EAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENL |
TRG.AHR.KLDN...L..FAK.LEEVCIETI...GFMT.D.AACIKGLP.V..S.YLNTFEFMDKLGENL | |
Retrocopy | TRGSAHRTKLDNDTKLSYFAKSLEEVCIETI>AGGFMTRDSAACIKGLPSVPHSHYLNTFEFMDKLGENL |
Parental | KTKLAQ |
K.KLAQ | |
Retrocopy | KIKLAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 16 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 313 .96 RPM |
SRP017611_liver | 0 .04 RPM | 475 .23 RPM |
SRP040447_lung | 0 .00 RPM | 37 .02 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 18 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020527 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004574 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013587 | 1 retrocopy |
retro_cpor_1010 ,
|
Homo sapiens | ENSG00000138413 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012619 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009797 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016077 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007143 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000014848 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000013125 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012865 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000023264 | 1 retrocopy |