RetrogeneDB ID: | retro_nleu_661 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397269.1:5780143..5781069(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM175A | ||
Ensembl ID: | ENSNLEG00000009133 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.8 % |
Parental protein coverage: | 75.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | ITDSQMDDVEVVYTIDIQKYIPCYQLFSFYNSSGEVNEQALKKILSNVK-KHVVGWYKFRRHSDQIMTFR |
IT.SQMDDVEVVYTIDIQKYIPCYQ.FSFY.SSGEVNEQALKKILSN...K.VVGWYKF..HSDQIMTFR | |
Retrocopy | ITVSQMDDVEVVYTIDIQKYIPCYQFFSFYTSSGEVNEQALKKILSNSQ<KNVVGWYKFPHHSDQIMTFR |
Parental | ERLLHKNLQEHFSNQDLVFLLLTPSIITESCSTHRLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYKTVS |
ERLLHKNLQEH.SNQDLVFLL.T.SIITES.STHRLEH.LYKPQKGLFHRVPLVVANLGMSEQL..KTVS | |
Retrocopy | ERLLHKNLQEHLSNQDLVFLL*T-SIITESRSTHRLEHALYKPQKGLFHRVPLVVANLGMSEQLDCKTVS |
Parental | GSCMSTGFHQAVQTHSSKFF-EEDGSLKEVHKINEMYASLQEELKSICKKVEDSEQAVDKLVKDVNRLKR |
GSCMSTGF..AVQTHSS....EED.SLK.VHKINEMYASLQEELKSICKKVEDSE.AVDKLVKDVNRLK. | |
Retrocopy | GSCMSTGFSRAVQTHSSXXX>EEDVSLKKVHKINEMYASLQEELKSICKKVEDSE*AVDKLVKDVNRLKQ |
Parental | EIKKRRRAQIQAAREKNIQKDPQENIFLCQALRTFF-PNSEFLHSCVMSLK-NRHVSKSSCNYNHHLDVV |
EI.KRRRAQIQAAREK.IQK.P....F........F.P..EFLHSCVMSLK.NRHVSK.S.N...HLDVV | |
Retrocopy | EIEKRRRAQIQAAREKSIQK-PSGEHFSLSTIKDLF>PDCEFLHSCVMSLK>NRHVSKGSSNNHYHLDVV |
Parental | DNLTLMVEHTDIPEASPASTPQIIKHKALDLDDR |
DNLTLMVE.TDIPEASPASTPQ..KHKALDLD.R | |
Retrocopy | DNLTLMVENTDIPEASPASTPQMVKHKALDLDGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013241 | 1 retrocopy | |
Homo sapiens | ENSG00000163322 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015357 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009133 | 2 retrocopies |
retro_nleu_1198, retro_nleu_661 ,
|
Pongo abelii | ENSPPYG00000014898 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000023645 | 2 retrocopies |