RetrogeneDB ID: | retro_pabe_3301 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:17485329..17486155(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM175A | ||
Ensembl ID: | ENSPPYG00000014898 | ||
Aliases: | None | ||
Description: | family with sequence similarity 175, member A [Source:HGNC Symbol;Acc:25829] |
Percent Identity: | 89.21 % |
Parental protein coverage: | 67.24 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | LKKILSNVK-KNVVGWYKFRRHSDQIMTFRERLLHKNLQEHFSNQDLVFLLLTPSIITESCSTHRLEHSL |
LKKILSN...KNVVGWYKFRRHSDQIMTFR.RLLHK.LQEHFSNQDLVFLL.TPSIITES.STH.LEH.L | |
Retrocopy | LKKILSNSQ<KNVVGWYKFRRHSDQIMTFRDRLLHKSLQEHFSNQDLVFLL*TPSIITESRSTH*LEHAL |
Parental | YKPQKGLFHRVPLVVANLGMSEQLGYKTVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINEMYASLQ |
YKP.KGLFHRVPLVVANLGMSEQLGYKTVSGSCMSTGFS.AVQT.SSKFFEEDGSLKEVHKINEMYASL. | |
Retrocopy | YKPRKGLFHRVPLVVANLGMSEQLGYKTVSGSCMSTGFS*AVQTYSSKFFEEDGSLKEVHKINEMYASL* |
Parental | EELKSICKKVEDSEQAVDKLVKDVNRLKREIEKRRGAQIQAAREKNIQ-KDPQENIFLCQALRTFFPNSE |
EELKSICKKVEDSEQAVDKLVKDVNRLKREIEKRR.AQI.AAREK.IQ.KDPQENIFLCQ.L.TFFP.SE | |
Retrocopy | EELKSICKKVEDSEQAVDKLVKDVNRLKREIEKRR*AQIPAAREKSIQ>KDPQENIFLCQELWTFFPDSE |
Parental | FLHSCVMSL-KNRHVSKSSCNYNHHLDVVDNLTLMVEHTDIPEASPASTPQIIKHKALDLDDRWQFKR |
FLHSCVMSL.KNRHVSK.S.N..HHLDVVDNLTLMVE.TDIPEASPASTPQ..KHK.LDL.DRWQFKR | |
Retrocopy | FLHSCVMSL>KNRHVSKGSSNNHHHLDVVDNLTLMVENTDIPEASPASTPQMVKHKTLDLADRWQFKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .15 RPM |
SRP007412_cerebellum | 0 .12 RPM | 7 .17 RPM |
SRP007412_heart | 0 .00 RPM | 2 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .80 RPM |
SRP007412_liver | 0 .03 RPM | 3 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4024 |
Pan troglodytes | retro_ptro_2728 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013241 | 1 retrocopy | |
Homo sapiens | ENSG00000163322 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015357 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009133 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000014898 | 2 retrocopies |
retro_pabe_2208, retro_pabe_3301 ,
|
Pan troglodytes | ENSPTRG00000023645 | 2 retrocopies |