RetrogeneDB ID: | retro_pabe_2208 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:32291035..32292210(+) | ||
Located in intron of: | ENSPPYG00000013596 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM175A | ||
Ensembl ID: | ENSPPYG00000014898 | ||
Aliases: | None | ||
Description: | family with sequence similarity 175, member A [Source:HGNC Symbol;Acc:25829] |
Percent Identity: | 77.94 % |
Parental protein coverage: | 96.58 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 3 |
Parental | VLSGFVLGAL-AFQHLNTDSDTEGFLLGEVKGEAKNSITDSQMDDVEVVYTIDIQKYIPCYQLFSFYNSS |
V.SGFVL..L.A.....T..DTEGFLL.EVK.EAKNSITDSQMDDVEVVYTIDIQKYIPC...FSFYNSS | |
Retrocopy | VFSGFVLTSL<ALHNPSTVWDTEGFLLEEVKDEAKNSITDSQMDDVEVVYTIDIQKYIPCF--FSFYNSS |
Parental | GEVNEQALKKILSNVKKNVVGWYKFRRHSDQIMTFRERLLHKNLQEHFSNQDLVFLLLTPSIITESCSTH |
.EVNEQALKKI.SNVKKNV.GWYKF.RHSDQIMTFRERLLHKNLQEHFSNQ.L.FLLLTPSIITESCSTH | |
Retrocopy | SEVNEQALKKIFSNVKKNVIGWYKFCRHSDQIMTFRERLLHKNLQEHFSNQ*LIFLLLTPSIITESCSTH |
Parental | RLEHSLYKPQKGLFHRVPLVVANLGMSEQLGYKTVSGSCMSTGFSRAVQTHSSKFFEEDGSLKEVHKINE |
RL.H.L.KPQKGL.HRV.LVVANLG.SEQLGYKTVSGSC.STGFS.AV.THSSKFFEEDGSLKEVHKINE | |
Retrocopy | RLKHAL-KPQKGLSHRVLLVVANLGISEQLGYKTVSGSCTSTGFSQAVKTHSSKFFEEDGSLKEVHKINE |
Parental | MYASLQEELKS-ICKKVEDSEQAVDKLVKDVNRLKREI-EKRRGAQIQAAREKNIQKDPQENIFLCQALR |
M........K......VED.EQA..KLVKD.NRLK.EI.EKRR.A.IQAA.EKNI.KDPQ.NIF..QAL. | |
Retrocopy | M*CFITRGIKEYMXXXVEDNEQAINKLVKDINRLKQEI>EKRR*A*IQAA*EKNI*KDPQGNIFPGQALW |
Parental | TFFPNSEFLHSCVMSLKNRHVSKSSCNYNHHLDVVDNLTLMVEHTDIPEASPASTPQIIKHKALDLDDRW |
TF.P.SEFLHS.V...KNRHVSKS.CN.N.H.DVV.NLTLMVEHTDIPEAS.AS.PQ..KHKALDLDDR. | |
Retrocopy | TFYPDSEFLHSYVVF*KNRHVSKS-CNNNLHFDVVANLTLMVEHTDIPEASLASRPQMTKHKALDLDDR* |
Parental | QFKRSRLLDTQDKRSKTDTDSSNQD-KASKMSSPETDEEIEKMKGFGEY |
QFK.S..L..QDK.SKTDT.SSNQ..KAS.MSSPE.DEEIEKMKG..EY | |
Retrocopy | QFKKSQQLEIQDKPSKTDTGSSNQE<KASTMSSPEIDEEIEKMKGSSEY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .15 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .17 RPM |
SRP007412_heart | 0 .00 RPM | 2 .95 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .80 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1911 |
Macaca mulatta | retro_mmul_1499 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013241 | 1 retrocopy | |
Homo sapiens | ENSG00000163322 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015357 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009133 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000014898 | 2 retrocopies |
retro_pabe_2208 , retro_pabe_3301,
|
Pan troglodytes | ENSPTRG00000023645 | 2 retrocopies |