RetrogeneDB ID: | retro_nleu_891 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397275.1:25614175..25615191(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000015375 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDCCAG3 | ||
Ensembl ID: | ENSNLEG00000008186 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.04 % |
Parental protein coverage: | 77.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DDRFEDLEEANPFSFKEFLKTKNLGLSKEDPASRIYAKEASRHSLELDHNSPPSQTGG-YGLEYQQPFFE |
DD.FEDLEEANPFSFKE.LKTKNLGLSKEDPAS.IYAKEASRHSL.LDHNS..SQTGG.YGLEYQQPFFE | |
Retrocopy | DDKFEDLEEANPFSFKELLKTKNLGLSKEDPASSIYAKEASRHSLGLDHNSSASQTGG>YGLEYQQPFFE |
Parental | DPTGASDLLDEEEDEDTGWSGAYLPSAIEQTHPERVPAGT-SPCS-TYPSFFSTPSEPAGPESLPPWALS |
DPTGA.DLL..EEDEDT.WSGAYLPSAI.QTHPERVPA.T..P...T.P..FS.P.......SL.P.... | |
Retrocopy | DPTGAGDLLNKEEDEDT*WSGAYLPSAIQQTHPERVPAST>GPAAHTFP--FSPPRRSWQGLSLCPRGC* |
Parental | DTDSRVSPASPAGSPSADFASHGESLGDRHLWTLQISYEALKDENSKLRRKLNEVQSFSEAQTEMVRTLE |
.T...VS.ASPAGSPSADFA.HGES.G.R.L.TLQISY.ALKDENSKLRRKLNEVQSFSEAQTEMV.TLE | |
Retrocopy | VTLILVSLASPAGSPSADFAAHGESPGYRRLRTLQISYDALKDENSKLRRKLNEVQSFSEAQTEMVKTLE |
Parental | RKLEAKMIKEESDYQDLESVVQQVEHNLELMTKRAVKAENHVVKLKQEISLLQAQVSNFQRENEALRCGQ |
RKLEAKMIKEESDY.DLESVVQQVE.NLELMTKRAVKAENHVVKLKQEI.LLQAQVSNFQRENEAL.CGQ | |
Retrocopy | RKLEAKMIKEESDYHDLESVVQQVEQNLELMTKRAVKAENHVVKLKQEINLLQAQVSNFQRENEALWCGQ |
Parental | GASLTVVKQNADVALQSLRVVMNSAQTSIQQLVSGAETLNLVAELLKSIDRISEIKDEEEDS |
G..LTVVKQNADVALQ.LRV.MNSAQ.SI.QLVS.AETLNLVAE.LKSIDRISEIKDEEEDS | |
Retrocopy | GTRLTVVKQNADVALQNLRVAMNSAQASIKQLVSRAETLNLVAEILKSIDRISEIKDEEEDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000165689 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010905 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026927 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008186 | 1 retrocopy |
retro_nleu_891 ,
|
Otolemur garnettii | ENSOGAG00000015872 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019772 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021555 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018876 | 2 retrocopies |