RetrogeneDB ID: | retro_rnor_2770 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:7844189..7845266(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000046063 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sdccag3 | ||
Ensembl ID: | ENSRNOG00000018876 | ||
Aliases: | None | ||
Description: | serologically defined colon cancer antigen 3 [Source:RefSeq peptide;Acc:NP_001013153] |
Percent Identity: | 99.44 % |
Parental protein coverage: | 83.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DFGYGKGKCTKQGPSGAHETRFGGDKLEDLEEANPFSFKEFLKTKNLSLSKEDTATSRIYPKEASRHPLG |
DFGYGKGKCTKQGPSGAHETRFGGDKLEDLEEANPFSFKEFLKTKNLSLSKEDTATSRIYPKEASRHPLG | |
Retrocopy | DFGYGKGKCTKQGPSGAHETRFGGDKLEDLEEANPFSFKEFLKTKNLSLSKEDTATSRIYPKEASRHPLG |
Parental | LDHNSPVSQPMGYGLEYQQPFFEDPTRASNLEEDEEDGWSRAYLPSAVEQTHSTRATQNSSPCGTYLSFF |
LDHNSPVSQPMGYGLEYQQPFFEDPTRASNLEEDEEDGWSRAYLPSAVEQTHS.RATQNSSPCGTYLSFF | |
Retrocopy | LDHNSPVSQPMGYGLEYQQPFFEDPTRASNLEEDEEDGWSRAYLPSAVEQTHSMRATQNSSPCGTYLSFF |
Parental | SNASELAGPESLPPWTLSDTDSRLSPASPAGNPNVDFAAHEESLGDRHLRTLQLSYEALKDENSKLRRKL |
SNASELAGPESLPPWTLSDTDSRLSPASPAGNPNVDFAAHEESLGDRHLRTLQLSYEALKDENSKLRRKL | |
Retrocopy | SNASELAGPESLPPWTLSDTDSRLSPASPAGNPNVDFAAHEESLGDRHLRTLQLSYEALKDENSKLRRKL |
Parental | SEVQSFSETQTEMVRTLERKLEAKMIKEESDFHDLESVVQQVEQNLELMTKRAVKAENHVMKLKQEVNLL |
SEVQSFSETQT.MVRTLERKLEAKMIKEESDFHDLESVVQQVEQNLELMTKRAVKAENHVMKLKQEVNLL | |
Retrocopy | SEVQSFSETQTKMVRTLERKLEAKMIKEESDFHDLESVVQQVEQNLELMTKRAVKAENHVMKLKQEVNLL |
Parental | QAQLSNFKRENEALRSGQGASLTVVKQNTDVALQNLHVVMNSAHASIKQLVSGAETLNLVAEILKSIDRI |
QAQLSNFKRENEALRSGQGASLTVVKQNTDVALQNLHVVMNSAHASIKQLVSGAETLNLVAEILKSIDRI | |
Retrocopy | QAQLSNFKRENEALRSGQGASLTVVKQNTDVALQNLHVVMNSAHASIKQLVSGAETLNLVAEILKSIDRI |
Parental | TEVKDEADS |
TEVKDEADS | |
Retrocopy | TEVKDEADS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 42 .49 RPM |
SRP017611_kidney | 0 .21 RPM | 36 .15 RPM |
SRP017611_liver | 0 .00 RPM | 22 .73 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000165689 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010905 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026927 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000008186 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015872 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019772 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021555 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018876 | 2 retrocopies |
retro_rnor_1215, retro_rnor_2770 ,
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