Parental gene:

SDCCAG3, ENSPPYG00000019772

Aliases:None
Description:serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:10667]
Organism:Orangutan (Pongo abelii)
Coordinates:9:133365879..133375638(-)


>ENSPPYG00000019772
ATGTCGGGCTACCCGCGCCGCCCGGGCGCCACCCCGCTGTCCCGAGCCCGGAGCCTCGCCATTCCCGACGATGACAGATT
TGAAGATCTTGAAGAAGCAAATCCATTCTCTTTTAAAGAGTTTCTGAAGACCAAGAACCTCGGCCTGTCAAAAGAGGATC
CGGCCAGCAGAATTTATGCAAAGGAAGCCTCGAGGCATTTACTGGGACTTGACCACAACTCCCCACCCTCCCAAACCGGG
GGGTATGGCCTGGAGTATCAGCAGCCATTTTTCGAGGACCCGACAGGGGCCGGTGACCTTCTGGATGAGGAGGAGGATGA
GGACACCCAATGGAGTGGGGCCTACCTGCCGTCTGCCATCGAGCAGACTCACCCCGAGAGGGTCCCTGCCGGCACGTTGC
CCTGCAGCACATACCTTTCTTTTTTCTCCACCCCGTCGGAGCTGGCAGGGCCCGAGTCTCTGCCCTCGTGGGCGTTGAGT
GACACTGATTCTCGCGTGTCTCCGGCCTCTCCGGCAGGGAGTCCTAGCGCAGACTTTGCGGCTCATGGAGAGTCTCTGGG
AGACAGGCACCTGCGGACGCTGCAGATAAGTTACGAAGCACTGAAAGATGAAAATTCTAAGCTGAGAAGAAAGCTGAATG
AGGTTCAGAGCTTCTCTGAAGCTCAAACAGAAATGGTGAGGACACTTGAGCGGAAATTAGAAGCAAAAATGATCAAGGAG
GAAAGCGACTACCACGACCTGGAGTCGGTGGTTCAGCAGGTGGAGCAGAACCTGGAGCTGATGACCAAACGGGCTGTAAA
GGCAGAAAACCACGTCGTGAAACTGAAACAGGAAATCAGTTTGCTCCAGGTGCAGGTCTCCAACTTCCAGCGAGAGAATG
AAGCCCTGCGGTGCAGCCAGGGCGCCAGTCTTACCGTGGTGAAGCAGAACGCCGACGTGGCCTTGCAGAACCTCCGGGTG
GTCATGAACAGCGCACAGGCTTCCATTAAGCAACTGGTTTCCGGAGCTGAGACACTGAATGTTGTTGCCGAAATCCTTAA
ATCTATAGACAGAATTTCTGAAATTAAAGACGAGGAGGAAGACTCTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .44 RPM
SRP007412_cerebellum 20 .55 RPM
SRP007412_heart 4 .79 RPM
SRP007412_kidney 25 .62 RPM
SRP007412_liver 24 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000165689 ortholog_one2one 1 retrogene
retro_hsap_1944,
Gorilla gorilla ENSGGOG00000010905 ortholog_one2one 1 retrogene
retro_ggor_1414,
Mus musculus ENSMUSG00000026927 ortholog_one2one 3 retrogenes
retro_mmus_1545, retro_mmus_3492, retro_mmus_711,
Nomascus leucogenys ENSNLEG00000008186 ortholog_one2one 1 retrogene
retro_nleu_891,
Otolemur garnettii ENSOGAG00000015872 ortholog_one2many 1 retrogene
retro_ogar_3418,
Pan troglodytes ENSPTRG00000021555 ortholog_one2one 1 retrogene
retro_ptro_1300,
Rattus norvegicus ENSRNOG00000018876 ortholog_one2many 2 retrogenes
retro_rnor_1215, retro_rnor_2770,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_256 92.39 54.42
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2. retro_pabe_1612 92.35 93.65
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Download FASTA sequences of all ENSPPYG00000019772 retrocopies