Parental gene: | SDCCAG3, ENSPPYG00000019772 |
| Aliases: | None |
| Description: | serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:10667] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 9:133365879..133375638(-) |
>ENSPPYG00000019772
ATGTCGGGCTACCCGCGCCGCCCGGGCGCCACCCCGCTGTCCCGAGCCCGGAGCCTCGCCATTCCCGACGATGACAGATT
TGAAGATCTTGAAGAAGCAAATCCATTCTCTTTTAAAGAGTTTCTGAAGACCAAGAACCTCGGCCTGTCAAAAGAGGATC
CGGCCAGCAGAATTTATGCAAAGGAAGCCTCGAGGCATTTACTGGGACTTGACCACAACTCCCCACCCTCCCAAACCGGG
GGGTATGGCCTGGAGTATCAGCAGCCATTTTTCGAGGACCCGACAGGGGCCGGTGACCTTCTGGATGAGGAGGAGGATGA
GGACACCCAATGGAGTGGGGCCTACCTGCCGTCTGCCATCGAGCAGACTCACCCCGAGAGGGTCCCTGCCGGCACGTTGC
CCTGCAGCACATACCTTTCTTTTTTCTCCACCCCGTCGGAGCTGGCAGGGCCCGAGTCTCTGCCCTCGTGGGCGTTGAGT
GACACTGATTCTCGCGTGTCTCCGGCCTCTCCGGCAGGGAGTCCTAGCGCAGACTTTGCGGCTCATGGAGAGTCTCTGGG
AGACAGGCACCTGCGGACGCTGCAGATAAGTTACGAAGCACTGAAAGATGAAAATTCTAAGCTGAGAAGAAAGCTGAATG
AGGTTCAGAGCTTCTCTGAAGCTCAAACAGAAATGGTGAGGACACTTGAGCGGAAATTAGAAGCAAAAATGATCAAGGAG
GAAAGCGACTACCACGACCTGGAGTCGGTGGTTCAGCAGGTGGAGCAGAACCTGGAGCTGATGACCAAACGGGCTGTAAA
GGCAGAAAACCACGTCGTGAAACTGAAACAGGAAATCAGTTTGCTCCAGGTGCAGGTCTCCAACTTCCAGCGAGAGAATG
AAGCCCTGCGGTGCAGCCAGGGCGCCAGTCTTACCGTGGTGAAGCAGAACGCCGACGTGGCCTTGCAGAACCTCCGGGTG
GTCATGAACAGCGCACAGGCTTCCATTAAGCAACTGGTTTCCGGAGCTGAGACACTGAATGTTGTTGCCGAAATCCTTAA
ATCTATAGACAGAATTTCTGAAATTAAAGACGAGGAGGAAGACTCTTGA
ATGTCGGGCTACCCGCGCCGCCCGGGCGCCACCCCGCTGTCCCGAGCCCGGAGCCTCGCCATTCCCGACGATGACAGATT
TGAAGATCTTGAAGAAGCAAATCCATTCTCTTTTAAAGAGTTTCTGAAGACCAAGAACCTCGGCCTGTCAAAAGAGGATC
CGGCCAGCAGAATTTATGCAAAGGAAGCCTCGAGGCATTTACTGGGACTTGACCACAACTCCCCACCCTCCCAAACCGGG
GGGTATGGCCTGGAGTATCAGCAGCCATTTTTCGAGGACCCGACAGGGGCCGGTGACCTTCTGGATGAGGAGGAGGATGA
GGACACCCAATGGAGTGGGGCCTACCTGCCGTCTGCCATCGAGCAGACTCACCCCGAGAGGGTCCCTGCCGGCACGTTGC
CCTGCAGCACATACCTTTCTTTTTTCTCCACCCCGTCGGAGCTGGCAGGGCCCGAGTCTCTGCCCTCGTGGGCGTTGAGT
GACACTGATTCTCGCGTGTCTCCGGCCTCTCCGGCAGGGAGTCCTAGCGCAGACTTTGCGGCTCATGGAGAGTCTCTGGG
AGACAGGCACCTGCGGACGCTGCAGATAAGTTACGAAGCACTGAAAGATGAAAATTCTAAGCTGAGAAGAAAGCTGAATG
AGGTTCAGAGCTTCTCTGAAGCTCAAACAGAAATGGTGAGGACACTTGAGCGGAAATTAGAAGCAAAAATGATCAAGGAG
GAAAGCGACTACCACGACCTGGAGTCGGTGGTTCAGCAGGTGGAGCAGAACCTGGAGCTGATGACCAAACGGGCTGTAAA
GGCAGAAAACCACGTCGTGAAACTGAAACAGGAAATCAGTTTGCTCCAGGTGCAGGTCTCCAACTTCCAGCGAGAGAATG
AAGCCCTGCGGTGCAGCCAGGGCGCCAGTCTTACCGTGGTGAAGCAGAACGCCGACGTGGCCTTGCAGAACCTCCGGGTG
GTCATGAACAGCGCACAGGCTTCCATTAAGCAACTGGTTTCCGGAGCTGAGACACTGAATGTTGTTGCCGAAATCCTTAA
ATCTATAGACAGAATTTCTGAAATTAAAGACGAGGAGGAAGACTCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 13 .44 RPM |
| SRP007412_cerebellum | 20 .55 RPM |
| SRP007412_heart | 4 .79 RPM |
| SRP007412_kidney | 25 .62 RPM |
| SRP007412_liver | 24 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000165689 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000010905 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000026927 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000008186 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015872 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000021555 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000018876 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_256 | 92.39 | 54.42 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1612 | 92.35 | 93.65 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000019772 retrocopies