Parental gene: | Sdccag3, ENSRNOG00000018876 |
| Aliases: | None |
| Description: | serologically defined colon cancer antigen 3 [Source:RefSeq peptide;Acc:NP_001013153] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 3:9188725..9195447(-) |
>ENSRNOG00000018876
ATGTCGGGCTACGCGCGGCGGCAGGGCGCGCCCCCACTATCGCGGACGCGGAGCCTCGTAGTTCCCGACGCTCCTGCGTT
CTATGAGCGCCGGTCTTGTCTCCCCCAGCTAGACTGTGAACGCCCCCATGGCGGGGACCTGCACCCCCAGTTCTTCGGCT
TTCGGCCGACGTTTATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCGGTAGGAGACACAGATTTTGGCTATGGAAAGGGG
AAATGTACTAAACAAGGCCCGTCGGGAGCCCATGAGACGCGCTTTGGAGGTGACAAACTTGAAGACCTTGAAGAAGCCAA
TCCATTCTCCTTCAAAGAGTTTTTGAAAACCAAGAACCTCAGCCTGTCAAAAGAAGACACAGCCACCAGTCGAATTTACC
CGAAGGAGGCCTCGAGGCACCCACTGGGACTAGACCACAACTCCCCTGTCTCCCAGCCCATGGGATATGGCCTGGAATAT
CAGCAGCCATTTTTTGAAGACCCAACAAGAGCCAGCAACCTAGAGGAGGATGAAGAGGACGGGTGGAGCAGAGCCTACCT
GCCGTCTGCCGTGGAGCAGACTCACTCCACGAGAGCCACGCAGAACTCATCGCCCTGTGGCACCTACCTTTCCTTCTTTT
CCAACGCGTCAGAGCTGGCAGGTCCTGAGTCTTTGCCCCCATGGACACTGAGTGACACTGACTCCAGGCTCTCCCCAGCG
TCTCCAGCTGGGAATCCTAATGTAGACTTTGCAGCTCATGAAGAATCCTTAGGGGACAGACACCTGCGGACGCTGCAGTT
AAGTTACGAAGCACTGAAAGATGAAAACTCTAAGCTCAGAAGAAAGCTAAGTGAGGTTCAGAGCTTCTCTGAAACTCAAA
CAGAAATGGTGAGGACGCTCGAACGGAAGTTGGAGGCGAAGATGATCAAGGAAGAGAGTGACTTCCATGACCTGGAGTCA
GTAGTCCAGCAAGTCGAACAGAACCTCGAACTGATGACCAAACGGGCTGTAAAAGCAGAAAATCATGTCATGAAGCTGAA
ACAGGAAGTAAATTTGCTCCAGGCACAGCTCTCCAACTTCAAGCGAGAAAACGAAGCCCTTCGGTCAGGCCAGGGTGCCA
GCCTTACCGTGGTGAAGCAGAACACCGATGTGGCCTTGCAGAACCTCCATGTTGTCATGAACAGTGCACACGCATCTATA
AAGCAGCTGGTGTCTGGAGCAGAGACACTGAACCTTGTTGCTGAAATCCTCAAGTCTATCGACAGAATTACTGAAGTTAA
GGATGAGGCAGACTCTTGA
ATGTCGGGCTACGCGCGGCGGCAGGGCGCGCCCCCACTATCGCGGACGCGGAGCCTCGTAGTTCCCGACGCTCCTGCGTT
CTATGAGCGCCGGTCTTGTCTCCCCCAGCTAGACTGTGAACGCCCCCATGGCGGGGACCTGCACCCCCAGTTCTTCGGCT
TTCGGCCGACGTTTATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCGGTAGGAGACACAGATTTTGGCTATGGAAAGGGG
AAATGTACTAAACAAGGCCCGTCGGGAGCCCATGAGACGCGCTTTGGAGGTGACAAACTTGAAGACCTTGAAGAAGCCAA
TCCATTCTCCTTCAAAGAGTTTTTGAAAACCAAGAACCTCAGCCTGTCAAAAGAAGACACAGCCACCAGTCGAATTTACC
CGAAGGAGGCCTCGAGGCACCCACTGGGACTAGACCACAACTCCCCTGTCTCCCAGCCCATGGGATATGGCCTGGAATAT
CAGCAGCCATTTTTTGAAGACCCAACAAGAGCCAGCAACCTAGAGGAGGATGAAGAGGACGGGTGGAGCAGAGCCTACCT
GCCGTCTGCCGTGGAGCAGACTCACTCCACGAGAGCCACGCAGAACTCATCGCCCTGTGGCACCTACCTTTCCTTCTTTT
CCAACGCGTCAGAGCTGGCAGGTCCTGAGTCTTTGCCCCCATGGACACTGAGTGACACTGACTCCAGGCTCTCCCCAGCG
TCTCCAGCTGGGAATCCTAATGTAGACTTTGCAGCTCATGAAGAATCCTTAGGGGACAGACACCTGCGGACGCTGCAGTT
AAGTTACGAAGCACTGAAAGATGAAAACTCTAAGCTCAGAAGAAAGCTAAGTGAGGTTCAGAGCTTCTCTGAAACTCAAA
CAGAAATGGTGAGGACGCTCGAACGGAAGTTGGAGGCGAAGATGATCAAGGAAGAGAGTGACTTCCATGACCTGGAGTCA
GTAGTCCAGCAAGTCGAACAGAACCTCGAACTGATGACCAAACGGGCTGTAAAAGCAGAAAATCATGTCATGAAGCTGAA
ACAGGAAGTAAATTTGCTCCAGGCACAGCTCTCCAACTTCAAGCGAGAAAACGAAGCCCTTCGGTCAGGCCAGGGTGCCA
GCCTTACCGTGGTGAAGCAGAACACCGATGTGGCCTTGCAGAACCTCCATGTTGTCATGAACAGTGCACACGCATCTATA
AAGCAGCTGGTGTCTGGAGCAGAGACACTGAACCTTGTTGCTGAAATCCTCAAGTCTATCGACAGAATTACTGAAGTTAA
GGATGAGGCAGACTCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 22 .73 RPM |
| SRP017611_kidney | 36 .15 RPM |
| SRP017611_brain | 42 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000165689 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000010905 | ortholog_many2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000026927 | ortholog_one2many | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000008186 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000015872 | ortholog_many2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000019772 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000021555 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1215 | 100.00 | 77.78 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2770 | 99.44 | 83.10 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000018876 retrocopies