Parental gene:

SDCCAG3, ENSG00000165689

Aliases:SDCCAG3, NY-CO-3
Description:serologically defined colon cancer antigen 3 [Source:HGNC Symbol;Acc:10667]
Organism:Human (Homo sapiens)
Coordinates:9:139296376..139305061(-)


>ENSG00000165689
ATGTCGGGCTACCAGCGCCGCCCGGGCGCCACCCCGCTGTCCCGAGCCCGGAGCCTCGCCATTCCCGACGCTCCAGCGTT
CTATGAGCGCCGGTCTTGTCTCCCCCAGCTAAATTGTGAGCGCCCCCATGGCAGGGACCTGGACTCCCCCTTCTTCGGCA
TTCGGCCGGCCTTTATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCCGTGGGAGACACAGATTTTGGCTATGGAAAGGGG
AAATGTTCTAAGCAGAGCCCGTCAGGAGCCCACGGGACACATTTTGGAGATGACAGATTTGAAGATCTGGAAGAGGCAAA
TCCATTCTCTTTTAGAGAGTTTCTGAAGACCAAGAACCTCGGCCTCTCGAAAGAGGATCCGGCCAGCAGAATTTATGCAA
AGGAAGCCTCGAGGCATTCCCTGGGACTTGACCACAACTCCCCACCCTCCCAAACCGGCGGGTATGGCCTGGAGTATCAG
CAGCCATTTTTCGAGGATCCGACAGGGGCTGGTGACCTCCTGGATGAGGAGGAGGATGAGGACACCGGATGGAGTGGGGC
CTACCTGCCGTCCGCCATCGAGCAGACTCACCCCGAGAGGGTCCCTGCCGGCACGTCGCCCTGCAGCACATACCTTTCCT
TTTTCTCCACCCCGTCGGAGCTGGCAGGGCCTGAGTCTCTGCCCTCGTGGGCGTTGAGTGACACTGATTCTCGCGTGTCT
CCGGCCTCTCCGGCAGGGAGTCCTAGCGCAGACTTTGCGGTTCATGGAGAGTCTCTGGGAGACAGGCACCTGCGGACGCT
GCAGATAAGTTACGACGCACTGAAAGATGAAAATTCTAAGCTGAGAAGAAAGCTGAATGAGGTTCAGAGCTTCTCTGAAG
CTCAAACAGAAATGGTGAGGACGCTTGAGCGGAAGTTAGAAGCAAAAATGATCAAGGAGGAAAGCGACTACCACGACCTG
GAGTCGGTGGTTCAGCAGGTGGAGCAGAACCTGGAGCTGATGACCAAACGGGCTGTAAAGGCAGAAAACCACGTCGTGAA
ACTAAAACAGGAAATCAGTTTGCTCCAGGCGCAGGTCTCCAACTTCCAGCGAGAGAATGAAGCCCTGCGGTGCGGCCAGG
GTGCCAGCCTGACCGTGGTGAAGCAGAACGCCGACGTGGCCCTGCAGAACCTCCGGGTGGTCATGAACAGTGCACAGGCT
TCCATCAAGCAACTGGTTTCCGGAGCTGAGACACTGAATCTTGTTGCCGAAATCCTTAAATCTATAGACAGAATTTCTGA
AGTTAAAGACGAGGAGGAAGACTCTTGA

Library Parental gene expression (RPM)
bodymap2_liver 29 .95 RPM
bodymap2_lung 12 .94 RPM
bodymap2_breast 16 .03 RPM
bodymap2_adipose 13 .24 RPM
bodymap2_adrenal 30 .11 RPM
bodymap2_skeletal_muscle 11 .48 RPM
bodymap2_thyroid 15 .27 RPM
bodymap2_prostate 21 .49 RPM
bodymap2_colon 16 .94 RPM
bodymap2_testis 21 .47 RPM
bodymap2_brain 7 .57 RPM
bodymap2_heart 8 .92 RPM
bodymap2_white_blood_cells 12 .09 RPM
bodymap2_lymph_node 44 .46 RPM
bodymap2_ovary 18 .83 RPM
bodymap2_kidney 16 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Gorilla gorilla ENSGGOG00000010905 ortholog_one2one 1 retrogene
retro_ggor_1414,
Mus musculus ENSMUSG00000026927 ortholog_one2one 3 retrogenes
retro_mmus_1545, retro_mmus_3492, retro_mmus_711,
Nomascus leucogenys ENSNLEG00000008186 ortholog_one2one 1 retrogene
retro_nleu_891,
Otolemur garnettii ENSOGAG00000015872 ortholog_one2many 1 retrogene
retro_ogar_3418,
Pongo abelii ENSPPYG00000019772 ortholog_one2one 2 retrogenes
retro_pabe_1612, retro_pabe_256,
Pan troglodytes ENSPTRG00000021555 ortholog_one2one 1 retrogene
retro_ptro_1300,
Rattus norvegicus ENSRNOG00000018876 ortholog_one2many 2 retrogenes
retro_rnor_1215, retro_rnor_2770,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1944 91.99 83.22
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Download FASTA sequences of all ENSG00000165689 retrocopies