RetrogeneDB ID: | retro_oana_84 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | Contig53069:7595..8156(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAT2A | ||
Ensembl ID: | ENSOANG00000003060 | ||
Aliases: | None | ||
Description: | methionine adenosyltransferase II, alpha [Source:HGNC Symbol;Acc:6904] |
Percent Identity: | 56.15 % |
Parental protein coverage: | 55.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAF |
.........L...VI..V.P.K.LD..T.Y.L.PSG.FV.GGP..DAGLTGRKIIVDTYGGWG.HGGG.F | |
Retrocopy | ISYQRLKQDLMKHVISVVIPQKFLDDTTEYLLNPSGSFVQGGPMSDAGLTGRKIIVDTYGGWGGHGGGCF |
Parental | SGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVAHPLSISIFHYGT--SQKSERELLEIVK |
SGKD.TKVDRS.AY.AR..AKSLV..G.CRR.LVQVSY.IGV..PLS......GT.....S...L..... | |
Retrocopy | SGKDGTKVDRSGAYYARMAAKSLVANGFCRRALVQVSYSIGVVEPLSLHVNTFGTCAANFSDSDLERLIV |
Parental | KNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRD--SFPWEVPKKLKY |
.NFD.R.G.I...L.LK.PI...T...GHFGRD...F.WE..K.LK. | |
Retrocopy | QNFDFRVGCIINELKLKRPIFSKTSVFGHFGRDDEDFTWERVKPLKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 251 .78 RPM |
SRP007412_cerebellum | 0 .00 RPM | 247 .74 RPM |
SRP007412_heart | 0 .00 RPM | 81 .38 RPM |
SRP007412_kidney | 0 .00 RPM | 366 .27 RPM |
SRP007412_liver | 0 .00 RPM | 31 .91 RPM |
SRP007412_testis | 0 .00 RPM | 1419 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013959 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007634 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015680 | 4 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000003060 | 1 retrocopy |
retro_oana_84 ,
|
Otolemur garnettii | ENSOGAG00000026925 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013520 | 2 retrocopies |