RetrogeneDB ID: | retro_obra_10 | ||
Retrocopylocation | Organism: | Oryza brachyantha | |
Coordinates: | 1:8693384..8694305(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OB01G22230 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OB05G12230 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.85 % |
Parental protein coverage: | 50.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SAAAVASEDEGDLRRGPWTVEEDALLVDYIATHGEGRWNSLARCAGLRRTGKSCRLRWLNYLRPDVRRGN |
.AA..A.E.E...RRGPW..EEDA.L....A.HGEGRWN..AR.AGLRRTGKSCRLRWLNYLRPDVRRG. | |
Retrocopy | AAAEMAEELEDGFRRGPWAAEEDAVLAGHVAAHGEGRWNEVARAAGLRRTGKSCRLRWLNYLRPDVRRGD |
Parental | ITAEEQLLILDLHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLRCDVNSKQFRDVVRHVWMPR |
.T..EQLLIL.LHSRWGNRWS.IAQ.LPGRTDNEIKNYWRTRVQKHAKQL.CDVNS.QFRDV.RH.WMPR | |
Retrocopy | FTPQEQLLILELHSRWGNRWSRIAQHLPGRTDNEIKNYWRTRVQKHAKQLGCDVNSGQFRDVMRHLWMPR |
Parental | LVERIQAADSSAA--AESDDVPVAPPV |
LVERIQAA...A...A.S.D...AP.V | |
Retrocopy | LVERIQAAAAAATALATSPDEHAAPAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza brachyantha | OB05G12230 | 1 retrocopy |
retro_obra_10 ,
|
Oryza glumaepatula | OGLUM05G02350 | 1 retrocopy | |
Oryza nivara | ONIVA05G02220 | 1 retrocopy | |
Oryza punctata | OPUNC05G02190 | 1 retrocopy | |
Oryza glaberrima | ORGLA05G0022200 | 1 retrocopy | |
Oryza rufipogon | ORUFI05G02420 | 1 retrocopy |