RetrogeneDB ID: | retro_oniv_30 | ||
Retrocopylocation | Organism: | Indian wild rice (Oryza nivara) | |
Coordinates: | 1:11934021..11934903(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ONIVA01G14890 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ONIVA05G02220 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.83 % |
Parental protein coverage: | 52.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TAAAAASEDEGDLRRGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYLRPDVRRGN |
T.AAAA...E.D.RRGPWTVEED..L..Y.A..GEGRWN.LAR.AGLRRTGKSCRLRWLNYLRPDVRRG. | |
Retrocopy | TSAAAAVAEEEDVRRGPWTVEEDAVLAGYVAANGEGRWNELARAAGLRRTGKSCRLRWLNYLRPDVRRGD |
Parental | ITADEQLLILDLHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLRCDVNSKEFRDVVRHVWMPR |
.T..EQLLIL.LH.RWGNRWS.IAQ..PGRTDNEIKNYWRTRVQKHAKQL.CDVNS..F.DV.RH.WMPR | |
Retrocopy | FTPQEQLLILELHFRWGNRWSRIAQHMPGRTDNEIKNYWRTRVQKHAKQLGCDVNSRQFKDVMRHLWMPR |
Parental | LVERIQADAAAAGEVAAPAPVSAA |
LVERI.A.AAA..E.AAP.P..AA | |
Retrocopy | LVERIHA-AAASSERAAPPPCAAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza brachyantha | OB05G12230 | 1 retrocopy | |
Oryza glumaepatula | OGLUM05G02350 | 1 retrocopy | |
Oryza nivara | ONIVA05G02220 | 1 retrocopy |
retro_oniv_30 ,
|
Oryza punctata | OPUNC05G02190 | 1 retrocopy | |
Oryza glaberrima | ORGLA05G0022200 | 1 retrocopy | |
Oryza rufipogon | ORUFI05G02420 | 1 retrocopy |