RetrogeneDB ID: | retro_ocun_1106 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:78729351..78729777(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDV3 | ||
Ensembl ID: | ENSOCUG00000012748 | ||
Aliases: | None | ||
Description: | CDV3 homolog (mouse) [Source:HGNC Symbol;Acc:26928] |
Percent Identity: | 68.75 % |
Parental protein coverage: | 95.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EEDDNEKREDPGG----TEKSSGPWNKAAPAQAPPAPGVVTETPEPATTSG-VYRPPGARLTTTRKTPQG |
.ED.....E..GG.....EKSS.PW.K...AQAPPAP...T.TPEPA.T...VYRPPGARLTT.RK.PQG | |
Retrocopy | KEDPGDNWEEGGGGDSSIEKSSAPWSKTTTAQAPPAPVIAT*TPEPAMTVV>VYRPPGARLTTIRKMPQG |
Parental | PPEIYSDTQFPSLQSTAKHVESRKDKEMEK-SFEVVRHKHRGRDEASKHQALKLELGNPYAVLEAQRSSH |
PPEI..DT.F.SLQSTAKHVES.KDKEMEK..FEV.RHKHRGR..ASKHQALKL.LGN..A.LE.QR.SH | |
Retrocopy | PPEIHRDTPFLSLQSTAKHVESKKDKEMEK<DFEVIRHKHRGRGKASKHQALKLHLGNQCAGLETQRRSH |
Parental | TQCN |
TQ.N | |
Retrocopy | TQGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 102 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 212 .95 RPM |
SRP017611_liver | 0 .00 RPM | 116 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000035556 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008963 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010208 | 5 retrocopies | |
Equus caballus | ENSECAG00000015689 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009864 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003470 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000012748 | 1 retrocopy |
retro_ocun_1106 ,
|
Sus scrofa | ENSSSCG00000011637 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014910 | 5 retrocopies |