RetrogeneDB ID: | retro_mluc_1296 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429816:1361778..1362209(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000001973 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDV3 | ||
Ensembl ID: | ENSMLUG00000009864 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.08 % |
Parental protein coverage: | 94.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SEKEEDDSEKREDPGDNWEEGGGGGGGVEKSSGPWNKTAPVQAPPAPVVVTETPEPAMTSGVYRPPGARL |
SE.EEDDSEKREDPGDNWE.G.GGGGGVEKSSGPWNKTA...AP.APV.VTETPE.AMT.GVYRPPGARL | |
Retrocopy | SEEEEDDSEKREDPGDNWEKGEGGGGGVEKSSGPWNKTALIKAPLAPVIVTETPELAMTNGVYRPPGARL |
Parental | TTTRKTPQGPPE-IYSDTQFPSLQSTAKHVESRKD-KEMEKSFE-VVRHKTRGRDEVSKNQALKLQLDNQ |
TT.RKT.QGPPE..YSDT.F.SLQS.AK.VES.KD.K.........VRHKTRGRDEVSKNQALKLQLDNQ | |
Retrocopy | TT-RKTSQGPPE>TYSDTPFQSLQSIAKKVESQKD>KKWRRALKSLVRHKTRGRDEVSKNQALKLQLDNQ |
Parental | YTVLEN |
.T.L.N | |
Retrocopy | HTMLNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000035556 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008963 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000002998 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010208 | 5 retrocopies | |
Homo sapiens | ENSG00000091527 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027821 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009864 | 1 retrocopy |
retro_mluc_1296 ,
|
Mus musculus | ENSMUSG00000032803 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003470 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000012748 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003600 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025898 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015409 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011637 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014910 | 5 retrocopies |